UFO04117.5prime Sequence
1139 bp (1043 high quality bases) assembled on 2009-02-13
> UFO04117.5prime
CAGTCGACATGCCCAAGAATAAAGGAAAAGGAGGCAAGAATCGTCGTCGT
GGTAAGAACGAGAACGAGTTCGAGAAGCGTGAGCTGATCTTCAAGGAGGA
CCAACAGGAGTACGCGCAGGTGACCAAGATGCTGGGCAACGGTCGTCTGG
AGGCAATGTGCTTTGATGGCGTCAAACGCCTGTGTCACATTCGGGGGAAA
CTTCGCAAGAAGGTGTGGATTAACCAGGGCGACATCATATTGGTGGGCTT
GCGTGACTACCAGGACTCGAAGGCTGATGTGATCCTCAAATACACACCGG
ACGAGGCCAGGAACCTGAAGACGTACGGCGAGTTCCCCGAGTCGGTGCGC
ATCAACGAGACAGTCACATTCGTGGAGGATGGCTTCGACGAGGACATCGA
GTTCGGCGATGAGATCAGCTCCGAGGATGACGCCGACTCCGTGGACAACA
TCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGG
AAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC
CTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAACGGGGGCGAAGAA
GTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAACTCACCCAGGG
ATTGGCTGAGACGAAAACATATCTCAATAAACCCTTTAGGAAATAGGCCA
GGTTTCACCGTAACACGCCACATCTGCGATATATGTGTAGAACTGCGAAA
TCGTCTGGTATTCACTCCAGAGCGATGAACGTTTCAGTTGCTCATGAACG
GTGTAACAGGGTGAACCCTATCCCATATCACCAGCTCACCGTCTTTCTTG
CCAATCAATCGGATGACAATCCTCAGGCGGCAAAGGATA
UFO04117.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-1A-RC | 1646 | CG8053-RC | 131..574 | 9..452 | 2220 | 100 | Plus |
| eIF-1A-RB | 1199 | CG8053-RB | 205..648 | 9..452 | 2220 | 100 | Plus |
| eIF-1A-RA | 1158 | CG8053-RA | 164..607 | 9..452 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18281692..18281933 | 211..452 | 1210 | 100 | Plus |
| 3R | 32079331 | 3R | 18274938..18275144 | 9..215 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:34 has no hits.
UFO04117.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:17 Download gff for
UFO04117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-1A-RB | 197..648 | 1..452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:01 Download gff for
UFO04117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-1A-RA | 156..607 | 1..452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:02 Download gff for
UFO04117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-1A-RA | 156..607 | 1..452 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:02 Download gff for
UFO04117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18274930..18275141 | 1..212 | 98 | -> | Plus |
| 3R | 18281694..18281932 | 213..451 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:01 Download gff for
UFO04117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14100652..14100863 | 1..212 | 98 | -> | Plus |
| arm_3R | 14107416..14107654 | 213..451 | 100 | <- | Plus |
