UFO04120.5prime Sequence
1140 bp (1014 high quality bases) assembled on 2010-09-10
> UFO04120.5prime
CAGTCGACATGTCGGAAAGAGAAGAAGAATCGATTGCATACTTGATGGAA
AATGGCATTTTCCCTCGACTTCTGGAGATTTTAAAGCAAATGGTGGATAT
CGATCCGTTGCCATCGGACCCTCTGATGCACATTTTGCATTTTCTGGGCT
GTCCGCTAATTCCGCAGGCCCAAATGAAGGCCCTGGAGCGGAAAGTGTCG
CGTGCCCATGATGAGCTGCGCCATTTGCGCCGTTTGATCATCGATTTGGA
TGCCTTGGATCAGCTTTACGATGGCGAAAACGAAGTGGAGGAGTATGTGG
GCAATGTGGAGGAAGCCGTCTCATCATCGAGCGAAGATTCCATGGTGGAG
AGCATTGAGACTACGATGGACTCCACGAAACCGGAGCTTGGGCTATGTAC
ACCGATGTCATCGCTCAAGGATTCAAATCCTTCAAATCCAGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTC
TGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGG
AGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGC
AGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAA
ACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTG
CGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAGTTGTCCATATT
GGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGATTGGCTGAGAC
GAAAACATATTCTCATAAACCCTTTAGGGAAATAGGCCAGGTTTCACGTA
CACGCACATCTGCGAATATATGTGTAGAACTGCCGAAATCGTCGTGTATT
CACTCAGAGCGATGAAACGTTTCAGTTGCCTCATGAACGGTGTAACAGGT
GACCTATTCCATATCACAGCTCACCCGTCTTCCATGCATACGATCGATGA
ACATCCTCAGCGCAATGATTAGCCGATAACTGGCTATTTC
UFO04120.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14545-RA | 813 | CG14545-RA | 99..532 | 7..440 | 2170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:29:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25850691..25850967 | 440..164 | 1385 | 100 | Minus |
| 3R | 32079331 | 3R | 25851032..25851193 | 168..7 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:29:55 has no hits.
UFO04120.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:58 Download gff for
UFO04120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14545-RA | 93..532 | 1..440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:24 Download gff for
UFO04120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14545-RA | 93..532 | 1..440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:23 Download gff for
UFO04120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14545-RA | 93..532 | 1..440 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:23 Download gff for
UFO04120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25850691..25850963 | 168..440 | 100 | <- | Minus |
| 3R | 25851033..25851197 | 1..167 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:24 Download gff for
UFO04120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21676413..21676685 | 168..440 | 100 | <- | Minus |
| arm_3R | 21676755..21676919 | 1..167 | 98 | | Minus |
