UFO04122.5prime Sequence
1097 bp (931 high quality bases) assembled on 2009-02-13
> UFO04122.5prime
CAGTCGACATGAAGGTGTTTTTTGTTCTTGCCGCCTTACTGGCAGCCGTG
AGTGCCCTGCCCATTGAGGAGCGCGTCAATGGAGAGAATGGCTGGTTCAT
CCCCAAGCTTGATGGAAGCTTCGAGTGGATGGACATGCAGGATGCCGAGG
ATCTTCTGGCCAACGGAGCCCAGATGGAGGGCCGCATCAGCACCAACGCC
GTGAACTTCTATGTCTACACCAAGTCGAACCCCACCGATGGCAAGGAGAT
CAAGGCCAAGTCCGGCTCCGTCGAGGATTCCCACTTCAACAAGGATCATG
GCACCCGCTTCGTCATCCACGGCTGGACCCAGAGGTACTCCGACGACATG
AACACCCGCATCACCAAGGCCTGGTTGCCCAAGGGCGACTACAACGTGAT
CGTCGTTGACTGGGCCCGTGCCCGATCCGTGGACTACGCCTCTTCCGTTC
TGGCTGTTCCTGGAGCCGGTGGCAAGGTTGGTGAGATGATCAAGTACCTG
CACGACCACCACGGCTTGGACTACGATAGCTTGGAGGTGATCGGACACAG
CCTGGGAGCCCATGTTGCTGGATACGCCGGAAAGACCGTCGGAGACAAGC
GCGTTCACACCATTGTGGGTCTGGATCCTGCCCTCCCCCTCTTCAGCTAC
GATAAGCCCGCTAAGCGTCTATCCACCGATGATGCCCACTACGTAGAGTC
CATCCAGACCAACGGCGGCAAACTGGGATTCCTGAAGCCCATCGGCAAGG
GAGCCTTCTACCCAATGGAGGCAAGAGCCAGCCCGGATGCGGACTGGACG
CCACCGGATCCTGCTCTCACGCACGCTCCGTTCTCTACTACGCCGAGGCC
GTCACCGAGGACAACTTTGGATCCATTTAAGTGCCATGACTACGAGGATG
CCGTTGCCAAGAACTGGCGAAGCACTTACTCCTGCGGTCGCATGGGAACA
ATTACACACGCTCACTGGGTCTAGGGTGATTTTCATGTCCCCTGGAACCG
CGAAGGACCCTTTCGCAAAATTAAGGAAGCTTTCAAAACAATTCGTTGGT
GCCGCGCCCAGTAAAGGGGATTATACTATAACTTATCCATATACATA
UFO04122.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6283-RA | 1083 | CG6283-RA | 24..1039 | 7..1022 | 4660 | 97.3 | Plus |
| CG6277-RA | 1085 | CG6277-RA | 337..975 | 306..947 | 1110 | 78.6 | Plus |
| CG6271-RA | 1072 | CG6271-RA | 324..966 | 302..947 | 1045 | 77.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27020282..27021256 | 1022..48 | 4405 | 97.2 | Minus |
| 3R | 32079331 | 3R | 27022181..27022819 | 947..306 | 1025 | 78.4 | Minus |
| 3R | 32079331 | 3R | 27025074..27025716 | 947..302 | 970 | 77.7 | Minus |
| 3R | 32079331 | 3R | 27006108..27006607 | 867..369 | 635 | 75.6 | Minus |
| 3R | 32079331 | 3R | 27017499..27017878 | 742..363 | 550 | 76.3 | Minus |
| 3R | 32079331 | 3R | 27018816..27019307 | 871..381 | 535 | 74.4 | Minus |
| 3R | 32079331 | 3R | 27021314..27021355 | 48..7 | 210 | 100 | Minus |
| 3R | 32079331 | 3R | 27019531..27019631 | 151..51 | 205 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:19:31 has no hits.
UFO04122.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:22 Download gff for
UFO04122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 18..986 | 1..968 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:19 Download gff for
UFO04122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 18..986 | 1..968 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:22 Download gff for
UFO04122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 18..986 | 1..968 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:22 Download gff for
UFO04122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27020349..27021255 | 49..955 | 99 | <- | Minus |
| 3R | 27021314..27021357 | 1..48 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:19 Download gff for
UFO04122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22846071..22846977 | 49..955 | 99 | <- | Minus |
| arm_3R | 22847036..22847079 | 1..48 | 91 | | Minus |
