UFO04124.5prime Sequence
1115 bp (922 high quality bases) assembled on 2010-09-10
> UFO04124.5prime
CAATCGACATGTCGGAATCAATGTCAGGTGATCACAAAATTTTATTAAAA
GGACATTCCTCCCAATATTTAAAACTTAATGTTGGTGGTCATTTATATTA
TACCACAATTGGAACACTGACGAAAAACAATGACACAATGCTGAGCGCAA
TGTTTAGTGGTAGAATGGAAGTGCTGACTGATTCGGAAGGATGGATTTTA
ATCGATCGCTGTGGAAATCATTTTGGTATCATTCTTAATTATTTAAGAGA
TGGCACTGTTCCATTACCAGAAACTAACAAGGAAATTGCAGAATTGCTTG
CCGAAGCCAAATACTACTGCATTACCGAGTTAGCTATTTCTTGTGAACGG
GCACTATATGCTCATCAGGAGCCAAAGCCAATTTGCCGCATTCCACTTAT
AACTTCACAAAAGGAAGAGCAGCTTTTATTAAGTGTTTCTTTAAAGCCGG
CTGTTATTCTTGTGGTTCAGCGGCAGAATAACAAGTATTCGTACACAAGT
ACATCAGACGACAACTTATTAAAAAATATTGAATTATTTGATAAGCTTTC
TTTGCGCTTTAACGAACGAATTTTGTTTATTAAAGACGTAATTGGGCCAA
GTGAAATCTGCTGCTGGTCATTTTACGGACACGGAAAAAAAAGTAGCTGA
AGTGTGTTGCACTTCAATAGTTTATGCAAACTGACAGAAAAGCATACTAA
AGTTGAATTTCCGGAAGCTCGTATATACGAAGAAACGCTACAAGTTCTTG
CTTTATGAAAACCGCAATGCACCAGACCAAGAGCTCATGCAGGCAACGTC
TTCAGCACGAGTAGGAAGTGCAAGTGGAACCGGATTAATCAGTACACAAG
CGATGAGGAAGAGACGCACTGGACTAGCGCGATACGATCCAACAAGCGGT
AATATCCGTCCGCAAGCTTTCTAGACCATTCGTTTTGGCGCGCGGGCCCG
GGTAAGTTGTCATTATTCATTATTCATTAATCATAATCATATTCACAACT
AGCCTAGGAGATCCTGGGTCATGACTAGTGCTTGGATTCTACCATAAAAA
ACGGCGGCGGCACGAGCGTTCTGAAACAATCCGAATGGAGTTCTTGAGGT
CATATACTTGGATCT
UFO04124.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:30:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10465-RA | 1241 | CG10465-RA | 254..1156 | 9..911 | 4275 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:30:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5339791..5340514 | 911..188 | 3185 | 98.1 | Minus |
| 2R | 25286936 | 2R | 5340561..5340742 | 190..9 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:30:08 has no hits.
UFO04124.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:02 Download gff for
UFO04124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10465-RA | 246..1152 | 3..911 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:34 Download gff for
UFO04124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10465-RA | 250..1156 | 3..911 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:30 Download gff for
UFO04124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10465-RA | 250..1156 | 3..911 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:30 Download gff for
UFO04124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5339791..5340512 | 190..911 | 98 | <- | Minus |
| 2R | 5340562..5340746 | 3..189 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:34 Download gff for
UFO04124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1227296..1228017 | 190..911 | 98 | <- | Minus |
| arm_2R | 1228067..1228251 | 3..189 | 98 | | Minus |
