UFO04125.5prime Sequence
1135 bp (1009 high quality bases) assembled on 2010-09-10
> UFO04125.5prime
CAGTCGACATGGACCAGCAGGTGGAGAGGTTACGGGTGAGATTGGTGCCC
GCCGGAACGGCGGAGGAACGTGCCAGGAATATTATTGCCAATGTGGTCCT
GGAGGATGGTCTGGTGCCCTTCATCGATGATCATGCGTCGGAGAAGGTGA
CCCTGATCCCCCAGCAGTCAGCTGCTCCACTTTCCGCCGCCCAACAGGAA
CCATCCATCCGGTACTACGCCGTTGGGCCCTCCACCTACAAGCTGTTGTG
TCCACTGTGCCGCGAGAGGAGTGAGGCGGCTGTGATGAGAGCAGCCAGCT
GCAAGGACGCCAGTTTCTGCCTCAGCCTGCTATCCTGCATCTTTCCGCTC
TTCTGGATCTGCTGCGTGTGCACCTGGTGCGGTTGCAATCGGGAGTGGAC
CACCAAGGGCGTTTACTGCAGCTCGTGTGGCGGCAAAGTGGGAATCCAGC
GCAAGGCCAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTG
CCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGG
CATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGG
GGGCGAAGAAGTTGTCCATATTGGGCAACTTTAAATCAAACTGGTGAAAC
TCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTA
GGGACATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATAATA
TGTGTAAGAACTTGCGGGAAATCGTCGTGTTTCACTCAGGCGATGAAAAC
GTTTCAGTTTGCTCTATGAACGGGTAACAAGGTGAAACTAATCATATCAC
AGCTCCACGTCTTTCTTGTCAATACGAATCCGGAT
UFO04125.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:29:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3746-RB | 692 | CG3746-RB | 14..467 | 8..461 | 2255 | 99.8 | Plus |
| CG3746-RA | 569 | CG3746-RA | 14..467 | 8..461 | 2255 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22649408..22649737 | 337..8 | 1635 | 99.7 | Minus |
| 2R | 25286936 | 2R | 22649220..22649348 | 461..333 | 630 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:29:45 has no hits.
UFO04125.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:56 Download gff for
UFO04125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3746-RA | 3..467 | 1..467 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:18 Download gff for
UFO04125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3746-RA | 7..471 | 1..467 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:19 Download gff for
UFO04125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3746-RA | 7..471 | 1..467 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:19 Download gff for
UFO04125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22649220..22649343 | 338..461 | 100 | <- | Minus |
| 2R | 22649408..22649744 | 1..337 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:18 Download gff for
UFO04125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18536725..18536848 | 338..461 | 100 | <- | Minus |
| arm_2R | 18536913..18537249 | 1..337 | 98 | | Minus |
