UFO04126.5prime Sequence
1128 bp (1030 high quality bases) assembled on 2010-09-10
> UFO04126.5prime
CAGTCGACATGACGTGGGCAGATACCGCGAAGTTGAACGCCGAAAGTGGA
CTCCCCAAAACCAGGCCACGCTGGATCACGTCTCGTGAGTTTCCTTCGGT
GAGCAGGTCATGCCCTTCGTGCACATCCTGGACTTGGCTGACTCTGGCGC
GATCAAGCCGCACGTGGACAACACTCGATTTTGCGGCAACACCACTGCGG
GCATTAGCATGCTCAGCGACTGAAGCGCGTGACCAAGGATCCCATGACTT
TGTCAGCCACTCTGAGGATCTGCTCCTGCCGCAACTCTCGCTCTATATTA
AGAGTGCCCTAGCGCGATACGAGTTCACCCACGAAATCCTGGCCAGAGAT
CAGTCGTGGTTCAAGGAGCGCTTGGTCGAAACGAACCTTGATGGCATACG
CATAGTTTCCTTTTCTCACAGCTGGTGTACATGTATATATATATATATAT
ACAATGAAAATTTATTCCGGTTTGGTGATCAGCTAATGGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAC
GGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATAATATTTGCCCATGGTGAAACGGGGGCGAAGAGTTGTCCATATTGGC
CACGTTTAATCAAACTGGTGAAACTCACCCAGGGATGGCTGAGACGAAAA
CATATTCTCATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTACCC
CGCCACATCCTTGCCGATATATGGTGTAGAACTGCGAAATCGTCGGTGTA
TTCACTCCGGAGCGGATGAAACGTTCAGTGCCTAATGAACCGTGTACAGG
TGACATTCCATCACAGCTCACGCTCATG
UFO04126.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:29:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14798-RA | 898 | CG14798-RA | 270..749 | 9..488 | 2400 | 100 | Plus |
| a6-RC | 2047 | CG3771-RC | 1968..2047 | 488..409 | 400 | 100 | Minus |
| a6-RB | 2218 | CG3771-RB | 2139..2218 | 488..409 | 400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:29:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1693385..1693694 | 179..488 | 1550 | 100 | Plus |
| X | 23542271 | X | 1693162..1693323 | 17..178 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:29:41 has no hits.
UFO04126.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:55 Download gff for
UFO04126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14798-RA | 251..740 | 1..492 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:16 Download gff for
UFO04126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14798-RA | 263..752 | 1..492 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:17 Download gff for
UFO04126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14798-RA | 263..752 | 1..492 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:17 Download gff for
UFO04126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1693158..1693323 | 13..178 | 98 | -> | Plus |
| X | 1693385..1693694 | 179..488 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:16 Download gff for
UFO04126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1587191..1587356 | 13..178 | 98 | -> | Plus |
| arm_X | 1587418..1587727 | 179..488 | 100 | == | Plus |
