UFO04127.5prime Sequence
1146 bp (1017 high quality bases) assembled on 2010-09-10
> UFO04127.5prime
CAGTCGACATGCCAGTTCGCTCTGCTAATCCGATACGCGCTAGAAGTTTG
ATCCGAGACAATTTGGAGAAACAGGCTGGTTGTCTAAATTTAATCCACTC
CAGAATGCCGAACATCAAAGTGTTTTCGGGCACCTCGCATCCGGATTTGG
CCCAGCGGATAGTCGATCGCCTGGGAATCGATCTCGGCAAGGTGGTTACG
AAGAAGTTCAGCAACTTGGAGACCTGTGTGGAAATTGGGGAATCGGTGCG
CGGCGAGGATGTGTACATCGTGCAATCGGGATCCGGCGAGATCAACGATA
ACTTGATGGAGCTGCTGATCATGATCAATGCGTGCAAAATTGCCTCAGCC
TCTCGTGTTACAGCTGTGATTCCTTGCTTTCCATATGCCCGCCAAGATAA
AAAAGACAAGAGTCGTGCGCCCATCTCGGCCAAATTGGTGGCCAACATGC
TGTCCGTTGCTGGAGCGGATCACATCATCACCATGGATCTGCACGCCTCA
CAGATTCAGGGCTTCTTTGATATACCAGTTGATAATCTCTATGCCGAGCC
GGCGGTACTCAAGTGGATCAAGGAGAACATTCCCGAGTGGAAGAACTCGA
TCATTGTGTCGCCCGATGCTGGCGGTGCCAAGCGTGTCACCTCAATTGCC
GATCGACTGAACGTGGAGTTCGCTCTGATACACAAGGAGCGCAAGAAGGC
CAACGAAGTGGCCTCTATGGTACTGGTGGGTGATGTCAAGGACAAGATTG
CCATTCTGGTCGATGACATGGCCGACACATGCGGCACCATTGTGCATGCC
GCCGATCGCCTGGTGGAGGCGGGAGCCACCAAGGTGTATGCTATTCTGAC
GCATGGCATTTTCTCGGGTCCGGCGATCTCGCGGATCAATAATGCCTGTT
TCGAGGCGGTAGTGTGACCAATACCATACCGCAGATGGACACATGCGGGA
CTGTCCCAAATCCAGTGCATTGATGTTTTCGATGATGTTCGCGAGCCGTC
AGAACACACACACGGCGAGAGTGTCTCGTATCTCTTCTCAATGTCATACG
CAAGCTTTCTAGACATCGTGGCGCGCGGGCCAGTTAGTGTCAAATCTATC
TAATCATATCATAATCCACTAGCTAGGGAATCTGCTTGACAAGTCT
UFO04127.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:29:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6767-RH | 1847 | CG6767-RH | 8..1046 | 9..1041 | 4970 | 99 | Plus |
| CG6767-RA | 2010 | CG6767-RA | 171..1209 | 9..1041 | 4970 | 99 | Plus |
| CG6767-RF | 2106 | CG6767-RF | 255..1305 | 9..1041 | 4840 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:29:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9684528..9684856 | 960..634 | 1545 | 99.4 | Minus |
| 3L | 28110227 | 3L | 9694233..9694450 | 226..9 | 1090 | 100 | Minus |
| 3L | 28110227 | 3L | 9689265..9689449 | 410..226 | 925 | 100 | Minus |
| 3L | 28110227 | 3L | 9684921..9685048 | 634..507 | 640 | 100 | Minus |
| 3L | 28110227 | 3L | 9686364..9686465 | 510..409 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:29:38 has no hits.
UFO04127.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:54 Download gff for
UFO04127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6767-RA | 159..1216 | 3..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:14 Download gff for
UFO04127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6767-RA | 166..1223 | 3..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:15 Download gff for
UFO04127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6767-RA | 166..1223 | 3..1053 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:15 Download gff for
UFO04127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9694233..9694453 | 3..226 | 98 | | Minus |
| 3L | 9684522..9684855 | 635..965 | 99 | <- | Minus |
| 3L | 9684921..9685045 | 510..634 | 100 | <- | Minus |
| 3L | 9686365..9686463 | 411..509 | 100 | <- | Minus |
| 3L | 9689265..9689448 | 227..410 | 100 | <- | Minus |
| 3L | 9684380..9684458 | 966..1041 | 91 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:14 Download gff for
UFO04127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9677480..9677558 | 966..1041 | 91 | <- | Minus |
| arm_3L | 9677622..9677955 | 635..965 | 99 | <- | Minus |
| arm_3L | 9678021..9678145 | 510..634 | 100 | <- | Minus |
| arm_3L | 9679465..9679563 | 411..509 | 100 | <- | Minus |
| arm_3L | 9682365..9682548 | 227..410 | 100 | <- | Minus |
| arm_3L | 9687333..9687553 | 3..226 | 98 | | Minus |
