UFO04129.5prime Sequence
1127 bp (1031 high quality bases) assembled on 2009-02-13
> UFO04129.5prime
CAGTCGACATGTTACAGACCCAGCTGGCAGTAAAAATGGCTGTCAAAAAA
CCACTTATGACGCCAGTGGTTAATCTAAGGTCCAAACGCCTTGCAGATCC
AGAAGTTACATGTTTTGCTCCAATTACTACAGTTGTATCCAAACCATTAA
TAAGTGGTAAAGCCCTTCCATCCATACTGGAAAGGATAAACAGGGGGGAC
TGGGACGTTGCCGATGAATACGATCCTCAAAGGCCAAATGAATATGAAAA
ACTTAAAGAGAAAAGTAATGGCAGTGACAAAAATCGAGCAGGCGTAAGTG
ATCGAGAAGACCGAGATGACAAAGAAAAAGATCGTAAACGTGGACGCGTC
GGTCGTCGAGAATTTTATAGAGACGAAGTCTCAGCCCCTAACCTGAAGCT
CAGCGGGTTTGGCCACCGGCAAAACGATGATGACATGTACTTGCCATCTC
CGGGCCTTGTAGCTAAACAGGGAGGTGCCACAATCGCTCCCCCTCCTTCC
CTCCAAGAAATGTCCATTGATAGTGGTTGTGAAGCCACTAATACTATGCC
ATATTCTGCCAGCTCGGTGGCCGCCAAAATTATGGCAAAATATGGGTTTA
AGGATGGTCAAGGTCTCGGAAAATCGGAGCAGGGCATGGCCATAGCTCTT
CAAGTAGAGAAAACCTCCAAACGTGGTGGACGGATCATACACGAAAAAGA
CGTTTTTCTGCCACCCCTAGCATTGTCGCCACCTTCTATTGGCTCCCAAA
TAGGAACAAGTCCCAGCCACAACGCCATGCCTCCTCCCCAGATGGTAGAC
ACGGCGGCTGAGAGTGGTGACATCGGATACAGCATTACGGAGATTATGAA
ATCACCAAGCAAGGTTGTTCTTCTACGCAACATGGTAGACCCGGGGACGT
TGACGAAGATTGGAACCCGAGGTAAAAGACGATGCACACAAGTACGGGGA
GTGAACAGTGTATCATTCACGAATCGTTCGGAACTGTGCAGAGATGCAGT
AAATATTCGTAAGTTAGGCGGATCGAAAGTGCAATTAAAGCTTATGGACC
TATGGGCGTTTTTTGGAGGACGTCAGTGCGAGCGGGCTTTACCACATGAT
AAGTAATGTTCATACATGGCAGCTTCG
UFO04129.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spf45-RA | 1397 | CG17540-RA | 143..1259 | 9..1104 | 5020 | 97.8 | Plus |
| Spf45-RC | 1257 | CG17540-RC | 48..1119 | 54..1104 | 4795 | 97.7 | Plus |
| Spf45-RB | 1354 | CG17540-RB | 188..1216 | 97..1104 | 4580 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 23067145..23068144 | 1040..54 | 4385 | 98 | Minus |
| 2L | 23513712 | 2L | 23068200..23068244 | 53..9 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:09:07 has no hits.
UFO04129.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:30 Download gff for
UFO04129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spf45-RA | 204..1320 | 9..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:43 Download gff for
UFO04129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spf45-RA | 143..1259 | 9..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:15 Download gff for
UFO04129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spf45-RA | 143..1259 | 9..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:15 Download gff for
UFO04129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 23067145..23068144 | 54..1040 | 98 | <- | Minus |
| 2L | 23068200..23068244 | 9..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:43 Download gff for
UFO04129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22959877..22960876 | 54..1040 | 98 | <- | Minus |
| arm_2L | 22960932..22960976 | 9..53 | 100 | | Minus |
