UFO04130.5prime Sequence
1132 bp (1041 high quality bases) assembled on 2009-04-08
> UFO04130.5prime
CAGTCGACATGGTTCGTAAACTCAAATTTCATGAGCAGAAGCTGCTTAAA
AAGGTGGACTTCATCACCTGGAAAGTGGACAACGGCGGCAAGGAGAACAA
AATCCTTAGGCGCTTTCACATTCAAAAAAGGGAGGACTACACCAAGTATA
ACAAGTTGTCCAGGGAGATACGGGAACTGGCAGAGAGGATAGCTAAGCTG
GATGCTTCAGAACCTTTCAAGACGGAGGCCACCACCATGCTCCTAAACAA
GCTGCACGCCATGGGAGTTTCCAATGATCAGCTTACTTTGGAAACGGCGG
CCAAGATATCTGCCAGCCACTTTTGCCGACGTCGTCTACCCGTGATCATG
GTGAAACTTCGAATGTCGGAGCACCTGAAAGCGGCCACAGACCTCATAGA
GCATGGTCATGTGCGTGTTGGTCCGGAAATGATTAAGGATCCTGCTTTTC
TGGTCTCCAGAAACCTCGAGGACTTTGTCACCTGGGTGGATGGCTCCAAG
ATCAAGGAGCATGTACTCCGCTACAACGACATGCGTGACGATTTCCAAAT
GGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTC
ATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCC
TGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCA
ACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGAT
CTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTG
CCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGA
AAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC
CTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGA
AGTTGTCCATATTGCCACGTTTAAATCAAACTGGTGAAACTCACCAGGAT
GCTGAAACGAAAAACATATTCCTCAATAACCCTTTAGGAAATAGCCAGCT
TCACCGTAACCCGCCCATCTGCGAATATATTGTGTAGAACTTGCCGGATC
GTCTTGATTCCATTCGAAGCGATTAAAACGTT
UFO04130.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4866-RA | 692 | CG4866-RA | 69..611 | 9..551 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17518484..17518695 | 146..357 | 1060 | 100 | Plus |
| 2R | 25286936 | 2R | 17518753..17518946 | 358..551 | 970 | 100 | Plus |
| 2R | 25286936 | 2R | 17518291..17518430 | 9..148 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:57:36 has no hits.
UFO04130.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:03 Download gff for
UFO04130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4866-RA | 26..568 | 9..551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:19 Download gff for
UFO04130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4866-RA | 69..611 | 9..551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:59 Download gff for
UFO04130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4866-RA | 69..611 | 9..551 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:59 Download gff for
UFO04130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17518291..17518427 | 9..145 | 100 | -> | Plus |
| 2R | 17518484..17518695 | 146..357 | 100 | -> | Plus |
| 2R | 17518753..17518946 | 358..551 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:19 Download gff for
UFO04130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13405796..13405932 | 9..145 | 100 | -> | Plus |
| arm_2R | 13405989..13406200 | 146..357 | 100 | -> | Plus |
| arm_2R | 13406258..13406451 | 358..551 | 100 | == | Plus |
