UFO04131.5prime Sequence
1155 bp (1049 high quality bases) assembled on 2009-04-08
> UFO04131.5prime
CAGTCGACATGGTTGTTGCTGTTGTCGCTGCCGACGTCGTTGAAAGAAAC
AGTAGCAGAAGCGGAATCGACGAAAGTAGTGGTTTCGCTGTTTCTCCATC
ATTTGTAGGTTCTACACCAGACTCTGTGGTTAAAAGCAATTATACTGATA
AGGAAACCACAACAACAAGGGCGGAACGAAAAGCGCTAGATGACAGTGTT
TCTGGCCAGCAAGCGTTAAGAGAGACTCAAAAGAACTTTTTTCAAAAAAA
GTTAAAAATCAACATCACAAACAACAACATGATTGATGCGGCCGAAGCAA
CGACAACGACGGAATCGACGCGGTCAATAAAGGGCATTCCCACCAAGAGT
GCCGTCAGCCAGCGAAACGTGGATATCAAGATAGACAGGACCAGTAACAT
GGAGGCGGCCACACAAGAGTTAACAAAGAAGGTGCTCAAACTAGATCTTG
GCGGCAAGAACCTCGATGAATACTCACTTAAATCGCCCAAGTCACCTATA
GCTGCACGATTGCCGCATCAAACGTCTATAACGTCATCGGTGGATGTAGA
GGACAGGAAGACATTACGAGAGGCCTTATACCAGGGAATATTTCATCGGC
ACCGCCGTACTATTTTTGCCGTGGGCAGTTTCCTGCGTATGCTGCGCAGC
CGCAACTCACAATACAATACGATACGCAGCTCTTCGGAAGGCGAGGACAT
CGATGAGCCGAAGCATCATCCGCAGAAACTTGAGCATTCCCAAGAGTACC
TCCAGACACCTGGCCAAGAAGTAACAACCATATACGCAACATTGCCATTT
GAACAACAGGGAAAATCGGATTCGCTTGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGGGGTCATTACTGGATCTATCACAGGAGTCCAAGGCGGAGC
CTCGATATCAAGTACCGCCCCGCCCTGCCCCCTCATTCGCAGGTAACTGA
TGATCAATAAGCAATTCTGGCCGACTGGAAGCATCCAACGCAAGATGAAC
CTGAA
UFO04131.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17159-RB | 3819 | CG17159-RB | 1621..2439 | 9..827 | 4095 | 100 | Plus |
| CG17162-RH | 4590 | CG17162-RH | 1621..2439 | 9..827 | 4095 | 100 | Plus |
| CG17162-RF | 3431 | CG17162-RF | 1233..2051 | 9..827 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23088715..23089210 | 504..9 | 2480 | 100 | Minus |
| X | 23542271 | X | 23087304..23087507 | 707..504 | 1020 | 100 | Minus |
| X | 23542271 | X | 23087111..23087232 | 827..706 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:30:00 has no hits.
UFO04131.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:01 Download gff for
UFO04131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17162-RE | 1412..2233 | 9..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:03 Download gff for
UFO04131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17162-RE | 1477..2298 | 9..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:55 Download gff for
UFO04131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17162-RF | 1233..2054 | 9..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:55 Download gff for
UFO04131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23087107..23087230 | 708..831 | 98 | <- | Minus |
| X | 23087304..23087506 | 505..707 | 100 | <- | Minus |
| X | 23088715..23089210 | 9..504 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:03 Download gff for
UFO04131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 65925..66048 | 708..831 | 98 | <- | Minus |
| XHet | 66122..66324 | 505..707 | 100 | <- | Minus |
| XHet | 67533..68028 | 9..504 | 100 | | Minus |
