UFO04135.5prime Sequence
1145 bp (1042 high quality bases) assembled on 2010-09-10
> UFO04135.5prime
CAGTCGACATGAAACTCAGCACATACAACTTCTTGACCTCCGTGGCCATC
AAGGGCGTCAAAGTGGGATTTCCCCTGAAACTGACGATTAACAAAAAGGA
AGTGGTGGAGAGCGAATTTAATCCAACTTTTGTGGAGAGAATCCTTCCCA
AGCTGGACTGGTCAGCGGTCTATGGAGCTGCTCAGGTGGCGGAACTCACA
GAAGACATTCCTGCCGTTCAGCCTGAAAACATTGTGGAGAATGAACTGCT
TTTGCAGAAGCTTCACCATCTGCTCTTCGAGATCGACGTGCTCGAGGGTC
AACTGGAGTGCCCGGAGACAGGTCGTGTGTTTCCCATCAGCGATGGTATA
CCAAACATGCTCCTTAACGAGGACGAGGTCGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGAT
GAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATAT
TTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTT
TAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACA
TATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACAC
GCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGTAT
TCACTCCAGGCGATGAAACGTTTCAGTTTGCTCATGAAAACGGTGTAACA
AGGTGAACACTATCCCATATCACCAGCTCACGTCTTTTCATTGCAATACG
AACTCCGATGACATCATAAGCCGGCAGGATGTGAATAGGCGGATAAACTG
GGCCTATTTCTTACGGTCTTAAAGCCGTAAATATCAGACGTGAAC
UFO04135.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:29:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12975-RA | 627 | CG12975-RA | 119..490 | 9..380 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:29:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21216132..21216324 | 380..188 | 965 | 100 | Minus |
| 3L | 28110227 | 3L | 21216476..21216579 | 189..86 | 520 | 100 | Minus |
| 3L | 28110227 | 3L | 21216644..21216721 | 86..9 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:29:51 has no hits.
UFO04135.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:58 Download gff for
UFO04135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12975-RA | 104..481 | 9..388 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:22 Download gff for
UFO04135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12975-RA | 119..496 | 9..388 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:21 Download gff for
UFO04135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12975-RA | 119..496 | 9..388 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:21 Download gff for
UFO04135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21216132..21216323 | 189..380 | 100 | <- | Minus |
| 3L | 21216477..21216578 | 87..188 | 100 | <- | Minus |
| 3L | 21216644..21216721 | 9..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:22 Download gff for
UFO04135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21209232..21209423 | 189..380 | 100 | <- | Minus |
| arm_3L | 21209577..21209678 | 87..188 | 100 | <- | Minus |
| arm_3L | 21209744..21209821 | 9..86 | 100 | | Minus |
