UFO04136.5prime Sequence
1130 bp (1032 high quality bases) assembled on 2010-09-10
> UFO04136.5prime
CAGTCGACATGTCGCGCCGGATGGTCTTCCTACAGTTGCTGCTGTGGGCA
GTAGTAGAGGGTCACTATTACTACGACTACGGCTACTGGGAGATCAACGA
GCCTTCACAGCTTTGCTCAGACTACGAAATGCTGGTGGTCAACACCCGCC
AGTGCGTAAGGCGCTGCAACATCGTCTGCCTGAATGGAGTGTGCTTCGAG
GACGGATCCTGTCCCTGTGCCGATCAGTATATGGCGGGTAATCCGGATGG
TTTGGTGTGTGCCGCAGAGTGCCTCCCCGGGTGCGTGGCGGCAGGTGGCT
ACTGCGCCGCACCAGATCTCTGTGTGTGCCGTGAGGACAGGCACTACTAC
TTTGATCCCCTCTCCCAAAAGTGCCGCCACAGGGCTCCCCGTCTGCTGGA
CCCCTGCCTTGGGCGCTGCACACATGGCAACTGCTCCTCCGACGGACGGT
GCATCTGTGCCCAGGGATACGAGCTAAGGGACAGCCTGCTTCATGGACAG
CAATGCATGCCAATCTGTGATCACAACTGCGGACCACGAGCTTACTGCTT
CGCTCCTAACTTGTGTGCCTGCCGGCACAAACAGCACCATTATGCTCACA
ACGGCATCTGCTCCGGGAACTATGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGAA
ATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCAT
TAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGA
ATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCTCAT
GGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGTACCGTTTAATTCCAA
CTGGTGAAACCTCACCCAGGGAATTGCTGAAAACGAAAAAACATTATTTC
CTCAATAACCTTTAAGGAAAAATAGGGCCA
UFO04136.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:29:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15861-RB | 1563 | CG15861-RB | 671..1289 | 5..623 | 3065 | 99.7 | Plus |
| CG15861-RA | 1067 | CG15861-RA | 175..793 | 5..623 | 3065 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:29:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24944018..24944426 | 413..5 | 2015 | 99.5 | Minus |
| 2R | 25286936 | 2R | 24943823..24943934 | 523..412 | 560 | 100 | Minus |
| 2R | 25286936 | 2R | 24943666..24943765 | 623..524 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:29:48 has no hits.
UFO04136.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:57 Download gff for
UFO04136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15861-RA | 168..796 | 1..630 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:20 Download gff for
UFO04136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15861-RA | 171..799 | 1..630 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:20 Download gff for
UFO04136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15861-RA | 171..799 | 1..630 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:20 Download gff for
UFO04136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24943823..24943933 | 413..523 | 100 | <- | Minus |
| 2R | 24943660..24943765 | 524..630 | 96 | <- | Minus |
| 2R | 24944019..24944429 | 1..412 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:20 Download gff for
UFO04136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20831183..20831288 | 524..630 | 96 | <- | Minus |
| arm_2R | 20831346..20831456 | 413..523 | 100 | <- | Minus |
| arm_2R | 20831542..20831952 | 1..412 | 99 | | Minus |
