UFO04161.5prime Sequence
1127 bp (1026 high quality bases) assembled on 2009-02-13
> UFO04161.5prime
CAGTCGACATGGCTGATGATCCAGAAAACTCAGTGGATAGGCCCACAGAC
GACGGAGATGCCGGCAAACCGGAAAAAATGTTTACGCTGAAGAAATGGAA
CGCAGTTGCAATGTGGAGTTGGGATGTGGAATGCGATATCTGTGCCATTT
GCCGTGTTCAAGTTATGGATTCCTGCCTTCGCTGCCAGGCGGACAACAAG
CGGGATGTGATGGGTCGCCAGGACTGCGTGGTGGTTTGGGGCGAGTGCAA
CCACTCCTTTCACCACTGCTGCATGTCGCTGTGGGTCAAGCAGAACAACC
GATGCCCGTTGTGCCAGCAGGAGTGGTCCATTCAGCGCATGGGAAAAGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTAT
CAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCAC
TCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCC
ATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGT
CGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTG
TCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATT
GGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCA
GGTTTTCACCGTACACGCCACATCTTGCGAATATATGTGTAGAAACTGCC
GGAAATCGTCGTGTATTCACTCAGAGCGATGGAAAACGTTTCAGTTTGCT
CATGGAAAACGGTGTAACAAGGTGAACACCTATCCCATATCACAGCTCAC
GTCTTTCATTGCATACGAATCGGATGACATTCATCAGCGGCCAGATGGTG
AAAAGCGAATAAACTGTGCTATTTTCTACGGTCTTAAAGGCCGTAATATC
CAGCTGACGCTGGTTAGTACTTGGACA
UFO04161.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Roc2-RB | 758 | CG8998-RB | 268..609 | 6..347 | 1710 | 100 | Plus |
| Roc2-RA | 584 | CG8998-RA | 172..513 | 6..347 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11652905..11653084 | 347..168 | 900 | 100 | Minus |
| 2R | 25286936 | 2R | 11678206..11678368 | 168..6 | 815 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:38:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 230..289 | 912..971 | 129 | 68.3 | Plus |
UFO04161.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:42 Download gff for
UFO04161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 165..514 | 1..351 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:04 Download gff for
UFO04161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 167..516 | 1..351 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:24 Download gff for
UFO04161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 167..516 | 1..351 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:24 Download gff for
UFO04161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11652905..11653083 | 169..347 | 100 | <- | Minus |
| 2R | 11678206..11678369 | 1..168 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:04 Download gff for
UFO04161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7540410..7540588 | 169..347 | 100 | <- | Minus |
| arm_2R | 7565711..7565874 | 1..168 | 97 | | Minus |
