UFO04162.5prime Sequence
1142 bp (1028 high quality bases) assembled on 2009-02-13
> UFO04162.5prime
CAGTCGACATGGCCCTCTCGATCTTCAAAGACTTGCCGGCGGAGCATCCT
CGCCACTTGATTCCCTCGCTATGCAGGCAATTCTATCATTTGGGATGGGT
GACCGGCACAGGAGGTGGCATGAGCATTAAGTACAACGATGAGATCTACA
TAGCACCGTCGGGCGTCCAGAAGGAGCGAATGCAGCCGGAGGATCTCTTC
GTGCAGGATATAACCGGCAAGGATCTGCAACTGCCGCCTGAGATCAAGGG
CCTGAAGAAGAGCCAATGTACGCCGCTCTTTATGCTGGCCTATCAGCATC
GGCAGGCGGGAGCCGTCATCCACACCCATTCGCAGCACGCCGTAATGGCC
ACGCTCCTGTGGCCAGGGAAAACCTTCCGCTGCACCCACTTGGAGATGAT
CAAGGGCGTCTACGATGAGGCGGACAAGCGATATTTGCGCTACGACGAGG
AGCTCGTCGTACCGATCATCGAGAACACACCCTTTGAACGCGACCTGGCC
GACAGTATGTACGCCGCCATGATGGAGTATCCGGGCTGCAGTGCGATCCT
GGTTCGACGACACGGCGTCTACGTTTGGGGACAGAACTGGGAGAAGGCCA
AAACCATGTCGGAATGCTATGACTATCTCTTCTCCATTGCCGTGGAAATG
AAGAAGGCCGGAATCGATCCGGAAAAGTTCGAGAGCTCAGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCACTCATCGCAG
TACTGTGTAATTCATTAAGCATTCTGCGACATGGAGCCATCACAAACGGC
ATGATGACCTGATCGGCAGCGGCATCAGCACTTGTCGCTGCGTATAATAT
TTGCCCATGTGAAACGGGGGCGAGAAGTTGTCATATTTGGCCAGTAATCA
ACTGTGAACTCACCAGGAATGCTGAACGAAACAATTTCCATA
UFO04162.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11134-RB | 913 | CG11134-RB | 119..803 | 5..689 | 3410 | 99.9 | Plus |
CG11134-RA | 901 | CG11134-RA | 107..791 | 5..689 | 3410 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13738440..13738912 | 137..609 | 2365 | 100 | Plus |
X | 23542271 | X | 13738245..13738376 | 5..136 | 645 | 99.2 | Plus |
X | 23542271 | X | 13738980..13739067 | 602..689 | 425 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:18:46 has no hits.
UFO04162.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:41 Download gff for
UFO04162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-RA | 100..791 | 1..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:32 Download gff for
UFO04162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-RA | 104..795 | 1..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:36 Download gff for
UFO04162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-RA | 104..795 | 1..694 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:36 Download gff for
UFO04162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13738242..13738376 | 1..136 | 98 | -> | Plus |
X | 13738440..13738910 | 137..607 | 100 | -> | Plus |
X | 13738986..13739071 | 608..694 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:32 Download gff for
UFO04162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13632275..13632409 | 1..136 | 98 | -> | Plus |
arm_X | 13632473..13632943 | 137..607 | 100 | -> | Plus |
arm_X | 13633019..13633104 | 608..694 | 97 | == | Plus |