UFO04163.5prime Sequence
1149 bp (1039 high quality bases) assembled on 2010-09-10
> UFO04163.5prime
CAGTCGACATGACCAACTCAAAGGGCTATCGTCGCGGCACACGGGACATG
TTTTCCCGTCCCTTCCGAAAGCATGGAGTTATTCCGTTGTCCACATACAT
GCGGGTTTTCAAGATCGGCGACATCGTTGACATTAAGGGACATGGTGCTG
TACAGAAGGGTTTGCCCTATAAGGCATATCATGGCAAAACCGGGCGCATA
TTCAATGTGACTCAGCACGCCGTTGGTGTAATAGTAAACAAACGCGTAAG
AGGCAAAATCCTTGCTAAGCGGGTCAATGTGCGCATTGAGCACATCCACC
ACTCCAAGTGCCGCGAAGATTTTTTGCGCCGCGTAAAGGAAAATGAGCGA
TTGCTGAAGGAGGCGAAGGAAAAGGGACAATGGGTCAGTCTGAAGCGCCA
GCCGGAACAGCCGAAGAAGGCGCACTTTGTTAAGAAACTTGAAGAACCGA
TTGCTCTGGCCCCGATTCCATACGAATTCATTGCCGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGC
TTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAAC
AAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCC
AAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTAC
TGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGC
ATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTAT
AATATTTGCCCATGGTGAAACGGGGGCGAAGAAGTTGTCCATATTGGCCA
CGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAA
ACATATCTCAATAAACCCTTTAGGAAATAGGCAGGTTTCACCGTAACACG
CACATCTTGCGAATATATGTGTAGAACTGCCGAAATCGTCGTGTATTCCC
TCCAGAGCGATGAAACGTTTCAGTTGCTCATGGAAACGGGTTACAAGTGA
AACCTATCCCTAATATAACAGCACGCTCAATGCTAATACGAAATCCGAA
UFO04163.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:27:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL21-RC | 656 | CG12775-RC | 97..573 | 9..485 | 2385 | 100 | Plus |
| RpL21-RB | 662 | CG12775-RB | 68..544 | 9..485 | 2385 | 100 | Plus |
| RpL21-RA | 614 | CG12775-RA | 55..531 | 9..485 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:27:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22247229..22247705 | 485..9 | 2385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:27:36 has no hits.
UFO04163.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:15 Download gff for
UFO04163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL21-RA | 55..541 | 9..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:03 Download gff for
UFO04163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL21-RA | 55..541 | 9..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:06 Download gff for
UFO04163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL21-RA | 55..541 | 9..494 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:06 Download gff for
UFO04163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22247229..22247705 | 9..485 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:03 Download gff for
UFO04163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22247229..22247705 | 9..485 | 100 | | Minus |
