UFO04164.5prime Sequence
1168 bp (1051 high quality bases) assembled on 2009-02-13
> UFO04164.5prime
CAGTCGACATGTCCGAAAAGAAGCGATTTGTGTGCGTTAATTGTGGACAC
AGAGTAAAAGAACTGTTCAAGAAATACAGCAATACTATGAAAACCACGCA
ATGCGACAACTGTCACCAAATCACGGATAAATACATTGAGTTCGAGGAGT
TTATCATATTAATAGATGCACTGCTATTAGATTCGTGCGCCTTCCGGCAC
ATTATATACAATGGCGACTTTAAGCTCTACTGGAAGGTTTCGCTGGTGGT
GCTGCTCCTGGAATCCTTTGCGCTGTGCCGCCAAAAACTGCCCGACCCTC
CGAATGCCTCTTTGCATGTCCACGAAAAGGGCTTTTACACATATACCCTT
CAAAACATGGGAGATTACATGTTCATGACTCTATTGCTGCTAATAATCAC
CGCCACTCTGAGTATTGATTGGATGCAGAAAATAGGCTTTCGAAATTTTT
CTTTAATTATACTCAAAGTGGTGCTGATATCCAACCTGTCCAAGTTCTTC
CTTCTGCCCATTTTGGTGTGGCGAAATAACACGACCGTTTTTGGCCGGAA
CTTGCACCATCTTCTGGTCATGGGACATCACCTCTGCTCCCTGGTCCTCG
CCTACCAGGCAGTCGGAGCCACTAGGAAGAACCTTCGATGGTGGGCTCTA
ACTTTGGTTGTTATAGCTTTCGCCTTCAAGGAAACCGCGAGGCAGTTTGT
ATCACTAGTGGTGGAGGACAATGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCAACAGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCCCTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAACGGCATGATGAACCTGATC
GCCAGCGGCATCAGCACTTGTCGCCTTGGCGTTTATATTTGCCATGGTGA
ACCGGGGGCGAAAAGTTCTAATTGCAGTTAAATCAACTGGTGAAATTCAC
CAGATTGCTGAACGAAAC
UFO04164.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32442-RA | 934 | CG32442-RA | 93..806 | 9..722 | 3570 | 100 | Plus |
| CG32442-RB | 942 | CG32442-RB | 93..814 | 9..722 | 3480 | 98.9 | Plus |
| CG32442-RC | 930 | CG32442-RC | 93..802 | 9..722 | 3450 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21528346..21528706 | 722..362 | 1805 | 100 | Minus |
| 3L | 28110227 | 3L | 21528770..21528910 | 363..223 | 705 | 100 | Minus |
| 3L | 28110227 | 3L | 21528966..21529085 | 224..105 | 600 | 100 | Minus |
| 3L | 28110227 | 3L | 21529145..21529241 | 105..9 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:44:46 has no hits.
UFO04164.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:39 Download gff for
UFO04164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32442-RA | 66..779 | 9..722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:54 Download gff for
UFO04164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32442-RA | 93..806 | 9..722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:38 Download gff for
UFO04164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32442-RA | 93..806 | 9..722 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:38 Download gff for
UFO04164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21528346..21528704 | 364..722 | 100 | <- | Minus |
| 3L | 21528770..21528908 | 225..363 | 100 | <- | Minus |
| 3L | 21528966..21529085 | 105..224 | 100 | <- | Minus |
| 3L | 21529146..21529241 | 9..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:54 Download gff for
UFO04164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21522246..21522341 | 9..104 | 100 | | Minus |
| arm_3L | 21521446..21521804 | 364..722 | 100 | <- | Minus |
| arm_3L | 21521870..21522008 | 225..363 | 100 | <- | Minus |
| arm_3L | 21522066..21522185 | 105..224 | 100 | <- | Minus |
