UFO04165.5prime Sequence
1114 bp (1026 high quality bases) assembled on 2009-04-08
> UFO04165.5prime
CAGTCGACATGAAGTTAGTATCGATTTGGGCATTGGCAGCTCTTTGCCTT
TGCCTTGGACAAGTGGCCAGCAGCGAGAAGCTGCTTAACTGCTACTGGGG
CACGTGGGCCAACTATCGTCCCGGAGATGGAAAGTTCACACCCTCCGATA
TCGATCCCTCCCTGTGCACCCACATCAGCTACACCTTTTTCGGAATCAGC
GATGCCGGCGAGTTCAAGTCCCTGGACACCTGGCTGGACATGGACGATGG
TCTGGGCTTTATTAGCCAGACAATTGCTCTGAAGCAGCGCAATCCAAACC
TCAAGATTTTGGCGGTGGTTGGTGGTTGGAATGAAGGTTCCACCAAATAC
TCGGCCATGGCAGCCGATCCTGCCAAGCGTGCCACCTTCGTCTCCACTTC
CCTGGCCTTCATTCAGCAGTATAGCTTTGATGGCTTGGATTTGGATTGGG
AGTACCCTGGTCAGCGCGGAGGCAGTGAAGCGGATCGCGAGAACTTTGTT
ACTCTGCTGCGCGAGATTAAGGAGACCTACGATCAGTATGGCTTGGAGCT
GGGTATTGCTGTCGGTGCGTCCGAGAAATCGGCCAGCATCTCATACGACA
TTCCGGCCATTTCGCAGCACTTGACTTTCATTAACGTTATGACCTACGAC
TTCCACATGGCTCTGGATGGCTATCTGGGTCTCAATGCTCCTCTGCCCGA
AGTCGCCGAATCTATTGATTATTGGCTTTCTCATGGTGCTCCCGCTGAGA
AGCTTATCCTTGGCATTGGCTTCTATGGCCACAGCTACCAGATGTCCGAT
AGCTCACAGAACTGGCCCGGTGCTGCGTGCATTGGTCCCGGAACTGCTGG
CGTCTACACGCGGGAGAACGGATTCCTGGGCTACCACGAGATCTGCCTGA
ACAACTGGCAAACCGTGTTCGATCAGGAGAACGGTGCTCCATTATGCCTT
CAAGGTGATCAGTGATCGGCTATGACAATCCCGAAAGCATCCAGCTGAGA
TGCAGTGGTCGAGTCCCGCAATCTGGGTGTGCATGATGTGTCATCGAGAC
GATGATTTCGTGGTCTGGGCGGCAGTCTATCCACTGCTGAAACATGATCT
GTCTTGCAGAGTGA
UFO04165.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht4-RA | 1473 | CG3986-RA | 30..1123 | 9..1091 | 5120 | 98.6 | Plus |
| Cht9-RA | 1161 | CG10531-RA | 84..643 | 87..652 | 320 | 72.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21066416..21066687 | 526..255 | 1360 | 100 | Minus |
| 2R | 25286936 | 2R | 21065799..21066096 | 1029..735 | 1235 | 96.6 | Minus |
| 2R | 25286936 | 2R | 21066149..21066360 | 738..527 | 1060 | 100 | Minus |
| 2R | 25286936 | 2R | 21066748..21066925 | 256..79 | 890 | 100 | Minus |
| 2R | 25286936 | 2R | 21066989..21067058 | 78..9 | 350 | 100 | Minus |
| 2R | 25286936 | 2R | 21068979..21069131 | 239..87 | 255 | 77.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:15:52 has no hits.
UFO04165.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:29:43 Download gff for
UFO04165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht4-RA | 26..1143 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:57 Download gff for
UFO04165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht4-RA | 26..1143 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:59 Download gff for
UFO04165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht4-RA | 26..1143 | 1..1106 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:59 Download gff for
UFO04165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21066749..21066925 | 79..255 | 100 | <- | Minus |
| 2R | 21066989..21067062 | 1..78 | 94 | | Minus |
| 2R | 21065709..21066095 | 736..1106 | 94 | <- | Minus |
| 2R | 21066152..21066360 | 527..735 | 100 | <- | Minus |
| 2R | 21066416..21066686 | 256..526 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:57 Download gff for
UFO04165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16953214..16953600 | 736..1106 | 94 | <- | Minus |
| arm_2R | 16953657..16953865 | 527..735 | 100 | <- | Minus |
| arm_2R | 16953921..16954191 | 256..526 | 100 | <- | Minus |
| arm_2R | 16954254..16954430 | 79..255 | 100 | <- | Minus |
| arm_2R | 16954494..16954567 | 1..78 | 94 | | Minus |
