UFO04166.5prime Sequence
1108 bp (1014 high quality bases) assembled on 2009-04-08
> UFO04166.5prime
CAGTCGACATGAGCGACTTTAACAAATATTGCGAAGAAGCTGCGAGGGAA
GCGCTTCCGGACTCGGAAGACGAGGAAGACATCGGCGATGAGGACACTTG
TAGCGCACAGGATCTTGCCGCCGAATTCCAGCTGAAGTACAAGCCGCAGG
ACGAAGTCAGTGTGTCCTTGCAGCGTGAATATGTTCTTAGCCTGGCCGCA
GATCAAGGATTCTCACGGATGGCCGCCGGACTGTCCAATTCAGCAGTGCA
TATCTATAATTTGGATTCGGGCGCCGGGAAACTGGAGAACTTTAGCTATC
TGCCGCCCACAGATTCGCCGCAGAGCGTAAGCATCTGTGGCGTTCGTTTC
CTCGACGAAGGACCACACAACATCCTGGTCGGCACCACCGATGGCTACGT
GCGCCTCTACGATCTGCGGCTAAGAGGCGAACAGGCGCGGTTCAAGTACA
CGCAGCACCCTAATGTGCCTCCGGTGCCCAAATCGCTTTCGTGCTTCGAC
AGAAACGCCAACGGTCGGATTATTTGCTGCGGCACCGAACAGTTTCACAG
CAACGCGTTCCTCGTGTTCTTCGATGTTCGGGAGCGCCAGCAAATGGGCG
TCTACTTCGAAAGCCATGAGGACGATATCACCTCGTTGCGGTTCCATGCC
CAGAATCCAGACCTTCTGGCCACGGGCAGTGTGGACGGGCTAGTAAACGT
GTTCGATGTGAAGGAGCCGGACGAGGATGAAGCACTGCTTAACACCTTCA
ACACGGAGAGCAGTGTGGCCCGGTTGGCGTGGCACAGAAACGTCTACGAC
AAGGACATCATATCCTGCGTCACGACCACTGGCGATTTCAGAGCTACGAG
TGCGAGGAGGGCGACGAGGTGGCATCCTTCGAGCGGCCGGATGTTACGGC
GGCATAAGAGAAAAAAGCCGCAAACTTCACCTGATAAATGCCCACATCAG
AGACGAGAGTCTTTTCTGTTGGCGGGCACCACTTCAACAGGCGAGATCTG
CGCTCGTAGCGTTACTCGAGACAGCTCAGCATTACATTCCAGGACAGCGA
TCGTCAGAGATAGTCTTTCGATCAAGATAGCTTACTTTTCGGCCGGTATC
CGCATGTA
UFO04166.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12134-RA | 1526 | CG12134-RA | 252..1273 | 9..1015 | 4710 | 98.3 | Plus |
| CG12134-RB | 1581 | CG12134-RB | 333..1328 | 35..1015 | 4580 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9971475..9972391 | 35..946 | 4345 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:56:03 has no hits.
UFO04166.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:29:42 Download gff for
UFO04166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12134-RA | 241..1227 | 1..981 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:00 Download gff for
UFO04166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12134-RA | 247..1233 | 1..981 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:21 Download gff for
UFO04166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12134-RA | 247..1233 | 1..981 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:21 Download gff for
UFO04166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9971477..9972430 | 37..981 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:00 Download gff for
UFO04166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5858982..5859935 | 37..981 | 98 | == | Plus |
