UFO04171.5prime Sequence
1144 bp (1034 high quality bases) assembled on 2010-09-10
> UFO04171.5prime
CAGTCGACATGCTGAAGTGGACGGCATCGGCGCAGCGCCTGAACGAGATT
CCCGTGCACGATCAGGATGCCAACCAGCCGCAGAGGAGGAGGCTGCAGAG
GAGGCAGCGCCGTCAGCGGAGGGCCACCATTGCCAACAAGGAGAACGTGC
CTGACACCGTGGGCTACACCTCCACGCCAGTGCCCATTACCCGGCTGCGC
AACAGTCCCCTGGTCCTGGCGCCGCTGAGCGATATCCGGAATGTCACCCC
GGAGGCGGTGGTGCGCAGTCAGGCGCCCCAAAGGGTACAGAGTGTGCGAT
ACGCCACCACATTGCCACGTTTTGCCGAGGACTACTCGCCCAACGGACTG
CCCAGTGGTCAGCACTTGGCGCTGAGGGGCCTGGCTCCGTTGGATCCCTT
TCTGGGCCAGCCGCGCTATATTGTAGGCTCGGGTGCAGGAGTTAACAAAC
TCAAGCAGCGTAGACTGGACGAGGACTTTGTGGCCACCTTGGAGCCGGAG
TTGCAGGAGACGGCAGTGCCAGAGCCACCCACCCCCAAGGTGGAAGTGCG
TCCAAGCACACCGCAGCCCGCCTCCACGCAGATGGGTGATCAGACCTTGG
ATCGCCTAATCGATGCCATCTTGGATTCCGCCTGCAAGGCGAACGCCAGC
AGCAAGAAGAAGCCGAGAAGGTCCACCTTCAATCTGCGCAGACGCACCTT
GGTCAAGCAGCAAATGGAGTCGAACTGCCCCCAGGAGGTGCTGTCGCCAT
CCTACGCACCTGGAGACGATCCGGCCTCGGATCTGAGCTTTGGCCTGGAT
CCCCTGCCCATGCACAACCTGATGCCCACTCCGGAACCGGCATCGCCCCT
GGCCAAGATTCCTCACAACTTGCTTGTCCAACTGGCCACTCCAGTGGCCC
CCAAGTCTGCCCCCTGCGACACACCTTCTGCCTGGAGACTCCAGTCAGGG
CCCTGAAGAGGACCCGCAAGGAGATCGTCGCCAGGAGTCCCTCATAGCGC
TACAAGGTCGACGAGCGCATACTCGAGGTGGGATTGCCCTGCCCTCGTCT
AATTATGTCGCAGCTTCTAGAACATCGTTTGGCCGCGGTTCAGGTTATGG
TCAATCATATCATATCAAATCATAATCCACACTAGCCTAGAGAG
UFO04171.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:29:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12496-RA | 1537 | CG12496-RA | 104..1164 | 7..1059 | 5050 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:29:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2409738..2410798 | 1059..7 | 4900 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:29:32 has no hits.
UFO04171.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:52 Download gff for
UFO04171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-RA | 96..1167 | 1..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:11 Download gff for
UFO04171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-RA | 98..1169 | 1..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:12 Download gff for
UFO04171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-RA | 98..1169 | 1..1064 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:12 Download gff for
UFO04171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2409746..2410802 | 1..1051 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:11 Download gff for
UFO04171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2303779..2304835 | 1..1051 | 98 | | Minus |
