UFO04172.5prime Sequence
1152 bp (1048 high quality bases) assembled on 2010-09-10
> UFO04172.5prime
CAGTCGACATGGCGAGTCCCAGAACGCGACGGGTGCTCCAGGAACTGAAA
CCCCAGGATGAGAACTCGAAATGCTTCGAGTGCGGTACCCACAATCCGCA
GTGGGTGTCCGTGACCTACGGCATCTGGATCTGCCTGGAGTGCTCCGGCA
AGCATCGCAGTCTGGGCGTGCATCTGTCCTTCGTGCGCTCCGTCACTATG
GATAAGTGGAAGGACATCGAGCTGGAGAAGATGAAGGCGGGCGGCAATCG
CAATGCGCGCGAGTTTCTGGAGGATCAGGAGGACTGGAACGAACGGGCGC
CTATCACGCAGCGTTACAACTCGAAGGCGGCTGCTTTGTACCGCGATAAG
ATAGCCACCTTGGCCCAGGGCAAGAGCTGGGATCTCAAGGAGGCGCAAGG
CCGCGTGGGCAGCAACAATAGCTTCAGCTCAGGTGGCTCCAGCAACAGCA
GCTACCAGTCGCGACCCAGTGCAACAGGTTATGGCGGAAACGGAGGCTAT
CAGAATGGCGGAGGCGCCGAGCCTGGAGGCTATCAGCAGTACCAAACGCA
GGAGTTCAAGGACCAGAAGGAGGAGTTCTTCAGCCGACGCCAAGTGGAGA
ATGCCTCCAGGCCAGAAAACTTGCCACCGAGTCAGGGCGGAAAATATGCA
GGTTTCGGGTTCACACGCGAACCACCACCGAAAACGCAATCTCAGGAGCT
TTTCGACTCGACGCTTTCCACTTTGGCCTCTGGCTGGAGCCTTTTCTCCA
CCAACGCCTCCAAGTTGGCCAGCACCGCCAAGGAGAAGGCCGTCACCACC
GTCAATTTGGCCTCGACAAAGATTAAAGAGGGAACTCTGCTAGATTCCGT
ACAATGCGGAGTTACCGATGTAGCCAGCAAGGTCACCGATATGGGCAAAC
GAGGTTGGAATAATCTGGCGGGCAGCAACATTTCGTCGCCGCAGGCGGAT
ACACGATCCCAACTTCGAGGACAGCAGCGCCTACCAGCGTTCCAATTCCG
TGGGCCGGTAATCTGGGCCGGAGCTTGGTCAGCAGAGCGGCGTCAGCGAC
AGCGACTGGGGGCGCTGCCAGACACGGCACCAGCAAGTCGCACATGAACA
GCCCCGAGTTCGTTACCCACATTCGTTTGAATAGCAGCAGCGGGCGCGCG
GG
UFO04172.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:29:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ArfGAP1-RA | 2085 | CG4237-RA | 361..1504 | 1..1143 | 5290 | 98 | Plus |
| ArfGAP1-RB | 2025 | CG4237-RB | 361..1181 | 1..821 | 4075 | 99.8 | Plus |
| ArfGAP1-RB | 2025 | CG4237-RB | 1179..1444 | 879..1143 | 930 | 92.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:29:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12416540..12417092 | 616..64 | 2750 | 99.8 | Minus |
| 3L | 28110227 | 3L | 12416275..12416479 | 821..617 | 1025 | 100 | Minus |
| 3L | 28110227 | 3L | 12415645..12415871 | 1102..880 | 710 | 92.5 | Minus |
| 3L | 28110227 | 3L | 12415942..12416006 | 884..820 | 325 | 100 | Minus |
| 3L | 28110227 | 3L | 12417153..12417220 | 68..1 | 310 | 97.1 | Minus |
Blast to na_te.dros performed 2014-11-26 14:29:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy10 | 6006 | gypsy10 GYPSY10 6006bp | 3794..3831 | 454..491 | 118 | 78.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1541..1589 | 409..457 | 110 | 69.4 | Plus |
UFO04172.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:52 Download gff for
UFO04172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gap69C-RA | 484..1633 | 1..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:08 Download gff for
UFO04172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ArfGAP1-RA | 361..1510 | 1..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:10 Download gff for
UFO04172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ArfGAP1-RA | 361..1510 | 1..1152 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:10 Download gff for
UFO04172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12415945..12416004 | 822..881 | 100 | <- | Minus |
| 3L | 12416275..12416479 | 617..821 | 100 | <- | Minus |
| 3L | 12415637..12415869 | 882..1111 | 93 | <- | Minus |
| 3L | 12416540..12417087 | 69..616 | 100 | <- | Minus |
| 3L | 12417153..12417220 | 1..68 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:08 Download gff for
UFO04172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12409045..12409104 | 822..881 | 100 | <- | Minus |
| arm_3L | 12408737..12408969 | 882..1111 | 93 | <- | Minus |
| arm_3L | 12409375..12409579 | 617..821 | 100 | <- | Minus |
| arm_3L | 12409640..12410187 | 69..616 | 100 | <- | Minus |
| arm_3L | 12410253..12410320 | 1..68 | 97 | | Minus |
