UFO04173.5prime Sequence
1110 bp (1017 high quality bases) assembled on 2010-09-10
> UFO04173.5prime
CAGTCGACATGGTCACTCTGCCGCTCAGTGTTGCACAAACAGCTGCACTT
TGGGCGAAGATTTTCTCTCGACTCGCCATAAAAAAAATGATGGAACTGCA
CGCAAATGACGTTGACCTGGAGGACGGCGAGCTATCGGAGAGCGACGATG
ATGGCGTTTACACGCCGTTGCAGCGACCTGACGGTGCGGAGAAGGTGGCC
AGTCCCCTTACCACCTGCCATCAGATCCAGACTGCGTTAGAGGACGAGTC
ACAAAGCAACAGCGACTCCTCGACTGCCGAATCCTCCGAGGACGGGTGCA
TCAAGAAGCTTCGTACGGAATCCACCGGACCCGACGGCCACAAGAAGCGG
AAAAAGCGCATTCGGCGCACGGTAATGCGGCGCGTTCCGCCCACGGATGC
TGAAATGCAACCGAATCGAGCCCGTTTCAAGAAGTACAACGTGTGGGCTT
CTGCCCTGCAAGAGGATGCGCTCAGCGAGAATATGCGTGGCTGCGACGTT
ACCCGAAGCGGTCGGGATCGAAATGTTGAAAACTACGACTTCTCATTGCG
ATACCGGCTGAACGGCGAGAACACTCTAAAGCGACGACTCTCAAACTCTT
CGGAGGACGGCGGCGAATGCTCCCATCCAGCTCACAAGAGGGGAAGACCT
TCTAGTCGGCCCATCACCGGGAATCAACAGCGCGGTTTGGTCAAGAGTAG
AACGGGTCACCGGTCACGTCGTGGGACATCTTCGGCCAGCGGATCTTCCG
ATTTCTGCGAGCCCAGACACATTCTGGACTTAAACGAAGTGGGTGAGAGA
GATCCTTCGGATGTGGCTACCGAAATGGCCAGCAAACTGTACGAGGAAAA
GGACGAATTACTTGTTCGAGTCGTGAGGTTCTTGCATAGATGTGTGCCTA
GAGCTATACAGAAACTCAGCGCATTGAAGCCGATGGCGCATGATGATCAA
AACGGCATACGAGACGTACACCAGCCGGGGTATTCCTGTCTATAAGCACC
ACGATAACATCACTCAGGACAGCGAAGCGCATTTTAGTGAGGATCGCCGA
GTCTGGACAGTCTTGAGCAATCGAACGGTGATGCGAACGTAAGGTGAAGA
TTGAAGTGCT
UFO04173.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:27:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phax-RA | 1533 | CG8069-RA | 1..1118 | 13..1106 | 4940 | 97.3 | Plus |
Phax-RB | 1591 | CG8069-RB | 176..1176 | 130..1106 | 4355 | 97 | Plus |
Phax-RB | 1591 | CG8069-RB | 1..119 | 13..131 | 595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:27:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9114449..9115183 | 130..864 | 3675 | 100 | Plus |
2R | 25286936 | 2R | 9114270..9114392 | 9..131 | 615 | 100 | Plus |
2R | 25286936 | 2R | 9115238..9115330 | 864..951 | 250 | 94.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:27:25 has no hits.
UFO04173.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:01 Download gff for
UFO04173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 1..1081 | 2..1066 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:32:58 Download gff for
UFO04173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 1..1070 | 13..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:01 Download gff for
UFO04173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 1..1070 | 13..1066 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:01 Download gff for
UFO04173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9115239..9115330 | 865..951 | 94 | -> | Plus |
2R | 9114262..9114392 | 1..131 | 96 | -> | Plus |
2R | 9114451..9115183 | 132..864 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:32:58 Download gff for
UFO04173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5002744..5002835 | 865..951 | 94 | -> | Plus |
arm_2R | 5001767..5001897 | 1..131 | 96 | -> | Plus |
arm_2R | 5001956..5002688 | 132..864 | 100 | -> | Plus |