Clone UFO04173 Report

Search the DGRC for UFO04173

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:41
Well:73
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO04173.5prime Sequence

1110 bp (1017 high quality bases) assembled on 2010-09-10

> UFO04173.5prime
CAGTCGACATGGTCACTCTGCCGCTCAGTGTTGCACAAACAGCTGCACTT
TGGGCGAAGATTTTCTCTCGACTCGCCATAAAAAAAATGATGGAACTGCA
CGCAAATGACGTTGACCTGGAGGACGGCGAGCTATCGGAGAGCGACGATG
ATGGCGTTTACACGCCGTTGCAGCGACCTGACGGTGCGGAGAAGGTGGCC
AGTCCCCTTACCACCTGCCATCAGATCCAGACTGCGTTAGAGGACGAGTC
ACAAAGCAACAGCGACTCCTCGACTGCCGAATCCTCCGAGGACGGGTGCA
TCAAGAAGCTTCGTACGGAATCCACCGGACCCGACGGCCACAAGAAGCGG
AAAAAGCGCATTCGGCGCACGGTAATGCGGCGCGTTCCGCCCACGGATGC
TGAAATGCAACCGAATCGAGCCCGTTTCAAGAAGTACAACGTGTGGGCTT
CTGCCCTGCAAGAGGATGCGCTCAGCGAGAATATGCGTGGCTGCGACGTT
ACCCGAAGCGGTCGGGATCGAAATGTTGAAAACTACGACTTCTCATTGCG
ATACCGGCTGAACGGCGAGAACACTCTAAAGCGACGACTCTCAAACTCTT
CGGAGGACGGCGGCGAATGCTCCCATCCAGCTCACAAGAGGGGAAGACCT
TCTAGTCGGCCCATCACCGGGAATCAACAGCGCGGTTTGGTCAAGAGTAG
AACGGGTCACCGGTCACGTCGTGGGACATCTTCGGCCAGCGGATCTTCCG
ATTTCTGCGAGCCCAGACACATTCTGGACTTAAACGAAGTGGGTGAGAGA
GATCCTTCGGATGTGGCTACCGAAATGGCCAGCAAACTGTACGAGGAAAA
GGACGAATTACTTGTTCGAGTCGTGAGGTTCTTGCATAGATGTGTGCCTA
GAGCTATACAGAAACTCAGCGCATTGAAGCCGATGGCGCATGATGATCAA
AACGGCATACGAGACGTACACCAGCCGGGGTATTCCTGTCTATAAGCACC
ACGATAACATCACTCAGGACAGCGAAGCGCATTTTAGTGAGGATCGCCGA
GTCTGGACAGTCTTGAGCAATCGAACGGTGATGCGAACGTAAGGTGAAGA
TTGAAGTGCT

UFO04173.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
Phax-RA 1533 CG8069-RA 1..1118 13..1106 4940 97.3 Plus
Phax-RB 1591 CG8069-RB 176..1176 130..1106 4355 97 Plus
Phax-RB 1591 CG8069-RB 1..119 13..131 595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9114449..9115183 130..864 3675 100 Plus
2R 25286936 2R 9114270..9114392 9..131 615 100 Plus
2R 25286936 2R 9115238..9115330 864..951 250 94.6 Plus
Blast to na_te.dros performed on 2014-11-26 14:27:25 has no hits.

UFO04173.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:01 Download gff for UFO04173.5prime
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1081 2..1066 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:32:58 Download gff for UFO04173.5prime
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1070 13..1066 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:01 Download gff for UFO04173.5prime
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1070 13..1066 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:01 Download gff for UFO04173.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9115239..9115330 865..951 94 -> Plus
2R 9114262..9114392 1..131 96 -> Plus
2R 9114451..9115183 132..864 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:32:58 Download gff for UFO04173.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5002744..5002835 865..951 94 -> Plus
arm_2R 5001767..5001897 1..131 96 -> Plus
arm_2R 5001956..5002688 132..864 100 -> Plus