UFO04174.5prime Sequence
1151 bp (1033 high quality bases) assembled on 2009-02-13
> UFO04174.5prime
CAGTCGACATGCGCGTCCTTATTGCTCTGTGCCTTGTGGCTGCCGTTAGT
GCCAGAAGTGGCTATAACTACCAGCCTGCAGCTTCTGCCCCAGCTGTCGC
ATCCTTTGCTCCTTCCGGACCCAGTTACTCTCCTTCCGTGGCCGCTAGCC
AGGATGCCCCCGCCGAGACCTATGCACCTGCTTCTGCCCCCGAAGCTGCT
CCTTCCGCGGTTGCCACCAACTATGCGGCTCCCCAGGCCGAGCTCCAAAA
GGAGTTCTTCACGTACACCGCTGATGAGCAGGACTTCGTTGAACCAGCTG
GCTCTCAGCAGGTATCCGCCTCCTTGAACAAGGCCCTGCGTGTGATCTTC
ATCAAGGGACCCGAGAACACTGGCCTGGAGAACGCTGCTGTGGCTCTGGC
CAAGCAGGCTGGACAGCAGGAGACCGCCATCTATGTCCTGAACAAGCAGG
CTGATATCGGAGATCTGAGCAACAAGCTGAACTCTATCCGCAACAACAAC
AACAACAAGCCCGAGGTGCACTTCGTGAAATACCGCACCAACCAGGATGC
CCTCAACGCCCAGCAGGCCATCCAGTCGCAGTACGATCAGCTGGGAGGAT
CCTCCACCATTCTGAACGGAGGTGTGGCTCCCGTCCTGAACTTCGCATCT
CAGCCAGCTGCCCAGCAAGTGGCCGCTCCCTCGGCTCCTGGTAGCTCCTA
CCTGCCCGCTTCGGTCCTCCGTTTTCGCCAAGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGTCATTACTGGATCTATCAACAGGAGTCCAAGCGA
GCTCGATATCAAATACGCCCCGCCCTGCACTCATCGCAGTACTGTGTATC
ATAAGCATTCTGCCGACATGAAGCATCACAAACGCATGATGAACTGAATC
GCAAGCGCCATCAGCACTGTCGCTTGGCGTATAAATATTTGCCCATGGTG
AACGGGGCGAAGAGAGTGTCCATATGCAAGTAATCAACTGGGTAACACCA
G
UFO04174.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlH-RA | 920 | CG31080-RA | 63..785 | 9..731 | 3615 | 100 | Plus |
| TwdlJ-RB | 908 | CG5471-RB | 258..655 | 204..601 | 955 | 83 | Plus |
| TwdlM-RA | 1030 | CG5468-RA | 425..834 | 237..646 | 950 | 82.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26633872..26634579 | 24..731 | 3540 | 100 | Plus |
| 3R | 32079331 | 3R | 26630175..26630572 | 204..601 | 955 | 82.7 | Plus |
| 3R | 32079331 | 3R | 26628099..26628484 | 602..217 | 925 | 82.6 | Minus |
| 3R | 32079331 | 3R | 26619619..26620028 | 237..646 | 910 | 81.5 | Plus |
| 3R | 32079331 | 3R | 26624766..26625172 | 646..240 | 865 | 80.8 | Minus |
| 3R | 32079331 | 3R | 26622698..26623062 | 604..240 | 850 | 82.2 | Minus |
| 3R | 32079331 | 3R | 26632360..26632724 | 240..604 | 835 | 81.9 | Plus |
| 3R | 32079331 | 3R | 26626167..26626453 | 602..316 | 520 | 78.7 | Minus |
| 3R | 32079331 | 3R | 26656933..26657251 | 325..643 | 305 | 73 | Plus |
| 3R | 32079331 | 3R | 26620800..26621057 | 602..345 | 270 | 73.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:24 has no hits.
UFO04174.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:35 Download gff for
UFO04174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlH-RA | 53..788 | 1..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:13 Download gff for
UFO04174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlH-RA | 55..790 | 1..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:23 Download gff for
UFO04174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlH-RA | 55..790 | 1..737 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:23 Download gff for
UFO04174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26633872..26634584 | 24..737 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:13 Download gff for
UFO04174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22459594..22460306 | 24..737 | 99 | == | Plus |
