UFO04175.5prime Sequence
1153 bp (1028 high quality bases) assembled on 2009-02-13
> UFO04175.5prime
CAGTCGACATGTCGAAGGCTATTAAGTATTATTACGATTTCCTATCGCAG
CCATCCCGCGCCCTCTGGATTGCTATGAAATTGGGCAAGACCCCATTTGA
AGACTGCCCGGTTGCCCTGCGAAAACAGGAGCAATTGACCGACGAATATC
GCAGTATAAATCGGTTCCAAAAGGTGCCGGCCATCGTGGATGGTAAATTT
CAGTTGGGCGAGAGTGTCTCCATAGTGCGATATCTCGCGGACAAGGGAGT
CTTCAGTGAACAGCTGTACCCCAAAACCTTGGAGGAACGCGCGCGGGTGG
ACGAGTTCCTCGAGTGGCAGCATTTCAATGTCCGCTTGGTCTGCTCCCTG
TTCTTCCGTCAGGTGTGGCTTCTTCCGGCAAAGGGACTGGCGCCGGCTCC
CAAGCCAGAGTCTGTCAAGAAGCTAATCAAGGATGTGGAGAGTAATTTGG
GTCTACTGGAACGCCTCTGGCTGGAAAAGGACTTCTTAGTCGGCGACAAA
CTTACCGTGGCAGACATCTTCGGGTCTTCAGAAATTAATCAGATGAAGCT
CTGCCAGTACAACGTAAATGAGAAGCAATTCCCCAAGGTGGCCAAGTGGA
TGGAACGCGTTCGTGATGCTACCAATCCCTACTACGATGAGGCCCACAGC
TTCGTCTACAAGACCTCTCAGCAGGCAGTCAAGGCCAAAAACGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGA
CTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACA
GGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATC
GCAGTACTGTTGTAATCATAGCATTCTGCGACATGAGCCATCACAAACGC
ATGATGACCTGATCGCAGCGCATCAGCACTTGTCGCTTGCGTATATATTT
GCCCATGTGAACGGGCAAGAAGTGTCATATTGCCCGTTTAATCAAACTGG
TGAACTACCAGATGCTGAACCGAAACATTTCATAACCTTAGGAAATTGGC
AGT
UFO04175.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstT1-RA | 997 | CG30000-RA | 100..783 | 9..692 | 3420 | 100 | Plus |
| GstT2-RA | 887 | CG30005-RA | 172..677 | 105..610 | 335 | 72.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9606446..9606763 | 229..546 | 1590 | 100 | Plus |
| 2R | 25286936 | 2R | 9606825..9606970 | 547..692 | 730 | 100 | Plus |
| 2R | 25286936 | 2R | 9606087..9606204 | 9..126 | 590 | 100 | Plus |
| 2R | 25286936 | 2R | 9606280..9606382 | 127..229 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:13:16 has no hits.
UFO04175.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:34 Download gff for
UFO04175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30000-RA | 98..781 | 9..692 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:49 Download gff for
UFO04175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstT1-RA | 100..783 | 9..692 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:50 Download gff for
UFO04175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstT1-RA | 100..783 | 9..692 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:50 Download gff for
UFO04175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9606087..9606204 | 9..126 | 100 | -> | Plus |
| 2R | 9606280..9606382 | 127..229 | 100 | -> | Plus |
| 2R | 9606447..9606763 | 230..546 | 100 | -> | Plus |
| 2R | 9606825..9606970 | 547..692 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:49 Download gff for
UFO04175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5493592..5493709 | 9..126 | 100 | -> | Plus |
| arm_2R | 5493785..5493887 | 127..229 | 100 | -> | Plus |
| arm_2R | 5493952..5494268 | 230..546 | 100 | -> | Plus |
| arm_2R | 5494330..5494475 | 547..692 | 100 | == | Plus |
