UFO04176.5prime Sequence
1146 bp (1043 high quality bases) assembled on 2009-02-13
> UFO04176.5prime
CAGTCGACATGGGAGTAACTATCCTTCAACCGTATCCCTTACCCGAAGGC
AAATCGGGTGCCCACATAATCGATCAGCTGAGCAAGCGTCTGCTCGCCCT
GGGCGCCACACATGCCGGTCAATTTCTGGTGGACTGCGAAACGTTCATCT
CGACGCCACAGCCGCACAATGGAGCACCTGGACGCGCAGTCCACGTCCTG
CACAACTCCGAGTATCCCGCCTCCACGTTCTCGATCATCGACAATGGCAC
CGGCAAACAAGTGGCCATTGTCGCCGACAATATCTTCGATCTGCTCATGC
TCAAGATGACCAACACCTTCACCTCCAAAAAGCAGACCAAAATCGAGTCC
CGTGGCGCTCGTTTCGAGTATGGTGACTTTGTTATCAAACTCGGTTCCGT
CACCATGATGGAGCACTTCAAGGGCATCCTCATCGAAATCGAGTACAAGT
CATGCGTGATTCTGGCCTACTGCTGGGAAATGATACGCGAAATGCTGCAG
GGATTCCTCGGCATTGCTGTGAATAAGGACTTTCCCTCCTATTTCGCTCC
ACAGACAATAATGACGGCAATGGGGCAACAGCAGCTGCATGCCAAGCACA
ACGACATCTTTGAGCCAATGGACACCGTGAAACAATACCTGGAGCAGTTC
ACCAACTATAGGAAGCATGTGACTCTTATGGGCGGTATGGGCAGTGGACC
GGGTAGCCAACAGGTTGGTCCGAACGTGCATATGTCGCCGGCGGTGGCGG
GACTACATCGATCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCACAGGAGTCAAGCGAGCTCGAAATCAAATTACGC
CCCGCCTGCATCATCGCAGTACTGTTGTAATCATAGCATTCTGCGACATG
GAGCCATCAAACGGCATGATGACTGATCCCCAGGCGCCATCAGCCCCTTT
CGCCTTGCCTTATATATTTGCAAGGGTGAAACCGGGGCGAGATGTC
UFO04176.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED20-RB | 1037 | CG18780-RB | 88..843 | 9..764 | 3780 | 100 | Plus |
| MED20-RA | 1037 | CG18780-RA | 88..843 | 9..764 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8072006..8072761 | 764..9 | 3780 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:13:13 has no hits.
UFO04176.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:33 Download gff for
UFO04176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED20-RA | 76..839 | 1..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:47 Download gff for
UFO04176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED20-RA | 80..843 | 1..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:48 Download gff for
UFO04176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED20-RA | 80..843 | 1..764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:48 Download gff for
UFO04176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8072006..8072769 | 1..764 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:47 Download gff for
UFO04176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8072006..8072769 | 1..764 | 99 | | Minus |
