UFO04177.5prime Sequence
1145 bp (1037 high quality bases) assembled on 2010-09-10
> UFO04177.5prime
CAGTCGACATGGCTGCTGTTGTTCCCACTGAAACCTCCGCCGCCCCCGCC
TCCTGGTGTGGGCGCGGTGCCAAGCCCCGAACCTTTGAAAAGGAACCGCC
AGTCATCTGCTATGACAAGCCCGCAGCTTCGATCGTTTCGAAGGAGGAGT
ATGATAATAAACGTTATCGTGCCCTGACTGGCGATCTTGTGGAGACACTG
ATTGTGCCCAAACGGGAGGCACGCACCTGGACAATGCAAGAGGGTGATTT
GTGCCGCGTCACTGTCCACGAAGGTTCTCAGGTGGGCGACATGAACTTTT
GGAATCTGGAGAACACCGCCGAGCGCTTCTACTCGGGCAAGACGCGCCAG
CTGCACTCGTCGCATCTGCGCGTTTACGATCGTCTGTGGAGCTGCCTGCC
CCACCTGCGTCCCATGGCCACCTTTGTGTTTGATTCCCTTGCCGCCTATG
GCATCGATGAGGATGGCGGTGCTCTGCACGACGTAATTGGAACACGGTGC
GACGACTACACCTACAAGCTAATCACGGGCAAGGATCGGGTGGGCAGTTG
CCACAGTTCCCTAGTCAAGGCGGTGGTGGAGGAGCGCGGGCTGACCGAGC
AGGATGTACACGACGTGTGGAACATCTTTATGTGCACCGGATTTACACGG
GACACGCATCAGTATTTCTGCAAGGCAAGTCCAGCGCGCAAGGGGGATTT
CATTGAGTTTGTGGCCGACATGAATCTTCTGGTGGCTCTGAGCGCCTGTC
CACAGGGCGATGTCTCCATCGCAGTGGGCGCCGATGTGCCGGACGACAAG
TGCCACCCCCTCAAGGTCGAAGTGTTCCGTCGCAAGGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAACGCCCGGCGGCACCGAGCGTTCTGAACAAT
CCAGAATGGAGTTCTGAGGTCATTACTGGATTTTATCACAGGAGTCCAAG
GCGAGCCTCGAATATCAATACGCCCGCCTGCCACTCCATCGGCAGGTACT
TGTTGTATATTCATAAGCATTCTGGCCGAACATGGGAGCCATCAA
UFO04177.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:27:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10208-RA | 1064 | CG10208-RA | 95..923 | 8..836 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:27:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23773139..23773819 | 836..156 | 3405 | 100 | Minus |
| 3R | 32079331 | 3R | 23773886..23774033 | 155..8 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:27:21 has no hits.
UFO04177.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:00 Download gff for
UFO04177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10208-RA | 84..922 | 1..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:32:56 Download gff for
UFO04177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10208-RA | 88..926 | 1..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:00 Download gff for
UFO04177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10208-RA | 88..926 | 1..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:00 Download gff for
UFO04177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23773135..23773819 | 156..840 | 99 | <- | Minus |
| 3R | 23773886..23774040 | 1..155 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:32:56 Download gff for
UFO04177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19598857..19599541 | 156..840 | 99 | <- | Minus |
| arm_3R | 19599608..19599762 | 1..155 | 98 | | Minus |
