UFO04180.5prime Sequence
1099 bp (1006 high quality bases) assembled on 2010-09-10
> UFO04180.5prime
CAGTCGACATGTCGCTGCTGGGCGCCTTTGCCAGATTGAGTCTGCAGAGA
AGTGGCGGCGTCGCCGGTGCCGCCTTTGCACGTTGCCTCCACACGACACC
AGTTCTTTGTGCGGAGCCCCTGAAGAAAAAGAAGAAACTGGATCCGCAGA
TTGTCAAGCAGCGCGAGGATCGCAAGAAGAAGAAGATCGAAAAGCAGATT
CGCCGGCTGGAGAAGAATGCCCGTCAGCTGAAGCCCGTGGATGAACTGGA
GGTTCCACTGGAGCTCATCGACGAAAAGGACAAACGGCAGCGGAAGCTAG
CTCCACTGACCATCGACCAGTTGGAGGAACGTGCTCTCCTCAAGAAGCAG
TGGGCGCACTACAAGCACGACGAGCGCGTAGCAGACTTTCAGATCATCGA
CCGGCTGGTCCAGGCGCAAAACAAGGCGCTGGCGGAACTTCGGCGCGAGT
CCGAGGAGCTCTACCAGGCGGCCATCGATATCGATCCCCAGCTGCTGCCC
GTCGCCGTCAAAGGACCCGTTGCCACGCCCCCCATTAAGGATTACGTCAG
TCCCGATGGCGACTACCTGCACCAATCCATGAAGTGGGAGGTCAAAGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAAT
CATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTC
ATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGA
GCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATC
AACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACT
CATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAAGCC
ATCACAACGGCATGATGACCTGATCGCCAGCGGCATCAGCACTTGTCGCT
TGCGTATATATTTGCCCATGGTGAAAACGGGGCGAGAGTTGTCCATATGT
CACGTTTAAATCAAACTGCGAAACTCACCCAGATGCTGAAACGAAACTAT
TCTCAATAACCTTTAAGAATAGGCAGCTTTACGTACACCGCCATTCTGC
UFO04180.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL40-RA | 716 | CG5242-RA | 74..661 | 9..596 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:27:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11408386..11408701 | 281..596 | 1580 | 100 | Plus |
| 3R | 32079331 | 3R | 11408078..11408326 | 32..280 | 1245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:27:17 has no hits.
UFO04180.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:58:59 Download gff for
UFO04180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL40-RA | 69..662 | 9..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:32:54 Download gff for
UFO04180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL40-RA | 74..667 | 9..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:30:58 Download gff for
UFO04180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL40-RA | 74..667 | 9..602 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:30:58 Download gff for
UFO04180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11407991..11408016 | 9..34 | 100 | -> | Plus |
| 3R | 11408081..11408326 | 35..280 | 100 | -> | Plus |
| 3R | 11408386..11408707 | 281..602 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:32:54 Download gff for
UFO04180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7233713..7233738 | 9..34 | 100 | -> | Plus |
| arm_3R | 7233803..7234048 | 35..280 | 100 | -> | Plus |
| arm_3R | 7234108..7234429 | 281..602 | 99 | == | Plus |
