UFO04182.5prime Sequence
1120 bp (1020 high quality bases) assembled on 2010-09-10
> UFO04182.5prime
CAGTCGACATGGGAAAGCAAAATAGTAAACTAAAACCAGAAGTTTTGGAG
GATCTCAAGCAAAACACAGAGTTCACAGACGCTGAGATTCAAGAATGGTA
TAAAGGCTTTCTTAAGGACTGCCCTAGTGGGCATTTATCAGTAGAAGAGT
TTAAAAAGATTTATGGGAACTTTTTCCCATATGGTGACGCTAGCAAGTTT
GCAGAGCATGTCTTCCGGACATTCGACGCCAACGGCGATGGCACTATAGA
CTTTAGAGAGTTCTTGTGTGCACTAAGTGTCACATCGCGGGGCAAACTCG
AGCAGAAACTCAAATGGGCATTCTCAATGTACGATCTTGATGGGAACGGA
TACATATCGCGGCAGGAAATGCTAGAAATTGTTACAGCAATATATAAAAT
GGTCGGCTCGGTGATGAAAATGCCAGAGGACGAGAGTACTCCTGAGAAAC
GAACCGACAAGATTTTTCGTCAAATGGATCGAAACAAGGATGGGAAATTA
AGCTTGGAAGAGTTCATAGAAGGAGCCAAAAGTGATCCATCAATAGTACG
ATTATTACAGTGTGATCCACAGTCTCATGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTA
ATTCATTAAGCATTCTGCCGACATGGAAAGCCATCACAAACGGCATGATG
AACCTGATCGCCAGCGGCATCAGCACTTGTCGCCTTGCGTATAATATTTG
CTCATGTGAAACGGGGGCGAAGAAGTTGTCATATGCCACGTTTAAATCAA
CTGTGAAACTCACCCAGGGAATGCTGAACGAAAACATATCTCATAACCCT
TAGAATAGCAGTTCACGGTACACGCCCACATCTGCAATTATGTGTAGAAC
TGCGAATCGTCTGATTCATC
UFO04182.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:27:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nca-RA | 899 | CG7641-RA | 245..814 | 9..578 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:27:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19997029..19997220 | 196..387 | 960 | 100 | Plus |
| 3L | 28110227 | 3L | 19997292..19997483 | 387..578 | 960 | 100 | Plus |
| 3L | 28110227 | 3L | 19996848..19996968 | 77..197 | 605 | 100 | Plus |
| 3L | 28110227 | 3L | 19996711..19996780 | 9..78 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:27:33 has no hits.
UFO04182.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:13 Download gff for
UFO04182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nca-RA | 201..784 | 1..586 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:33:02 Download gff for
UFO04182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nca-RA | 237..820 | 1..586 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:04 Download gff for
UFO04182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nca-RA | 237..820 | 1..586 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:04 Download gff for
UFO04182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19996703..19996780 | 1..78 | 94 | -> | Plus |
| 3L | 19996850..19996968 | 79..197 | 100 | -> | Plus |
| 3L | 19997031..19997219 | 198..386 | 100 | -> | Plus |
| 3L | 19997292..19997489 | 387..586 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:33:02 Download gff for
UFO04182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19989803..19989880 | 1..78 | 94 | -> | Plus |
| arm_3L | 19989950..19990068 | 79..197 | 100 | -> | Plus |
| arm_3L | 19990131..19990319 | 198..386 | 100 | -> | Plus |
| arm_3L | 19990392..19990589 | 387..586 | 98 | == | Plus |
