UFO04185.5prime Sequence
1117 bp (974 high quality bases) assembled on 2009-02-13
> UFO04185.5prime
CAGTCGACATGTCGAGCGAGGAAACAAAGACTTTCACGCGGGCCGAGGTC
GCCAAGCACAACACGAACAAGGACACCTGGCTGCTCATACACAACAACAT
CTACGACGTCACCGCCTTCCTCAACGAGCATCCCGGTGGCGAAGAGGTGC
TCATCGAGCAGGCCGGCAAAGATGCCACGGAGAACTTTGAGGACGTTGGC
CACAGCAACGATGCCCGCGACATGATGAAGAAGTACAAAATCGGTGAGCT
GGTGGAGAGCGAAAGGACAAGCGTGGCCCAGAAGTCGGAGCCGACCTGGA
GCACGGAACAGCAAACCGAGGAGAGTTCTGTGAAGTCGTGGCTGGTGCCC
CTCGTCCTGTGCTTGGTGGCCACGCTCTTCTACAAGTTCTTCTTTGGCGG
TGCCAAGCAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGC
CCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGC
CGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGC
ATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGG
GGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAAC
TCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTA
GGAAATAGGCCAGTTTTCACCGTAACACCGCCACATCTTGCGAATATATG
TGTAGAACTGCCGGAAATCGTCGTGTATTCACTCAGAGCGATGAAACGTT
TCAGTTTGCTCATGGAAAACGGTGTAACAGGTGACACTATCCATATTCAC
CAGCTCACCGTCTTTCATGCATACGAATCCGATGACCATCATCAAGCGCA
AGATGGAATAGCCGATA
UFO04185.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyt-b5-RB | 830 | CG2140-RB | 105..507 | 8..410 | 2015 | 100 | Plus |
| Cyt-b5-RA | 692 | CG2140-RA | 88..369 | 129..410 | 1410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7535330..7535613 | 127..410 | 1420 | 100 | Plus |
| 2R | 25286936 | 2R | 7533610..7533730 | 8..128 | 605 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:05:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 230..290 | 974..1032 | 128 | 72.1 | Plus |
UFO04185.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:26 Download gff for
UFO04185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyt-b5-RB | 97..505 | 1..410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:07 Download gff for
UFO04185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyt-b5-RB | 99..507 | 1..410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:17 Download gff for
UFO04185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyt-b5-RB | 99..507 | 1..410 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:17 Download gff for
UFO04185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7533604..7533730 | 1..128 | 96 | -> | Plus |
| 2R | 7535332..7535613 | 129..410 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:07 Download gff for
UFO04185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3421109..3421235 | 1..128 | 96 | -> | Plus |
| arm_2R | 3422837..3423118 | 129..410 | 100 | == | Plus |
