UFO04186.5prime Sequence
1128 bp (1033 high quality bases) assembled on 2010-09-10
> UFO04186.5prime
CAGTCGACATGTCCCTCTCGTTGCTTCTGCGTGGCGCTGTCCGTTGCAAT
GCCGCAAATCTTGTTAAGTCGGCTCGCATCACTCCCCTGAAGAGCTACTC
CACCCTGGTGGCCAATGTCCAGCGGAAGGCGGTGGTCCAGCCCCTGGCCG
TGGCCAAGATTGTAGCGCCCGTCGTGCGCGAGATCTCCGTGAGTGCGCCC
CGCATGGCTTCCGCTGGATCCAGCCACACCCTGCTCTGGACTGTGGAGCG
AATTGTGTCCGCCGGCCTACTGGCCGTCATTCCAGCTGCCTTCATAGCTC
CATCCCAGGTATTGGACGCCCTCATGGCCATCTCTGTCGTCATCCACACC
CATTGGGGCGTGGAGGCCATGGTAGTTGACTACATGCGGCCATCTGTCGT
TGGAAACGTCCTGCCCAAGGTAGCCCACATTGCGCTGATCATCATCTCGG
TGGCCACGCTGGGCGGCCTCTTCTACTTCATCCAAAATGATGTGGGTCTG
GCCAATGGTATCAAGCGCTTCTGGGCCATCAAGGGCAAGGATGCCGAGAA
GGCTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACAT
GGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGC
ACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAACCGGGGGCGAGA
GTTGTCCATATTGGCACCGTTTAAATCAAACTGGTGAAACTCACCCAGGG
ATGCTGAGACGAAAACTATCTCATAACCTTTAGGGATAGCCAGTTTCACC
GGTACACGCCAATCTGCATATATGGTGTAGACTGCCGGATCGTCTGATTC
CACTCAAGCGAGTACGTTCAAGTTGCCA
UFO04186.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:29:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10219-RA | 894 | CG10219-RA | 105..652 | 7..554 | 2740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:29:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23759725..23759924 | 554..355 | 1000 | 100 | Minus |
| 3R | 32079331 | 3R | 23759984..23760173 | 356..167 | 950 | 100 | Minus |
| 3R | 32079331 | 3R | 23760245..23760361 | 167..51 | 585 | 100 | Minus |
| 3R | 32079331 | 3R | 23760452..23760496 | 51..7 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:29:22 has no hits.
UFO04186.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:50 Download gff for
UFO04186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10219-RA | 94..651 | 1..558 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:05 Download gff for
UFO04186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10219-RA | 98..655 | 1..558 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:05 Download gff for
UFO04186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10219-RA | 98..655 | 1..558 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:05 Download gff for
UFO04186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23759725..23759923 | 356..554 | 100 | <- | Minus |
| 3R | 23759985..23760172 | 168..355 | 100 | <- | Minus |
| 3R | 23760245..23760360 | 52..167 | 100 | <- | Minus |
| 3R | 23760452..23760498 | 1..51 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:05 Download gff for
UFO04186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19585707..19585894 | 168..355 | 100 | <- | Minus |
| arm_3R | 19585967..19586082 | 52..167 | 100 | <- | Minus |
| arm_3R | 19586174..19586220 | 1..51 | 92 | | Minus |
| arm_3R | 19585447..19585645 | 356..554 | 100 | <- | Minus |
