UFO04187.5prime Sequence
1150 bp (972 high quality bases) assembled on 2010-09-10
> UFO04187.5prime
CAGTCGACATGACATTCGGCAAAGTAGCGATTTTGCTCTGCAGCTTTCTG
CTGTTCTTGGTGCTGCCCGTACAGTCGGCGCCTGGTAAACTGAACGGTCG
AGTGGTGGGCGGTGAGGATGCGGTGAAAAATCAGTTTCCCCACCAGGTCT
CCCTGAGGAACGCCGGTTCCCACAGCTGTGGAGGTTCAATTCTGACCAGA
ACCTACATCTTAACCGCCGCCCATTGTGTCTCCAACGAGGACGTGAATCA
TGTGATTACGCCAATCGCTGCGGAGCGTTTCACCATTCGAGCGGGCTCAA
ACGATCGATTCAGCGGTGGAGTCCTTGTCCAGGTGGCCGAGGTAATTGTC
CACGAGGAGTATGGTAACTTCCTTAACGACGTTGCTCTGCTGCGACTAGA
GAGCCCACTGATTCTGTCCGCGAGCATTCAGCCCATCGATCTACCCACTG
TGGATACGCCAGCGGATGTAGATGTCGTAATTTCCGGATGGGGAAGGATC
AAACACCAGGGAGACTTGCCACGCTATCTGCAGTACAACACCCTAAAGTC
GATAACCAGGCAGCAGTGTGAGGAGCTGATCGATTTCGGATTTGAGGGCG
AGCTGTGCCTGCTCCACCAGGTGGACAATGGTGCTTGCAATGGCGATTCC
GGTGGCCCGGCCGTATATAACAACCAACTGGTGGGCGTGGCCGGATTCGT
CGTGGACGGATGTGGGTCCACCTACCCGGACGGATATGCCAGGGTCTTTT
ACTTTAAGGACTGGATCAAAAAGCACTCTGATGTCGCAAGCTTTCTAGAC
CATTTCGTTTGGCGCGCGGGCCCAGGGTAAGTGGGTCATAATCATAATCA
TAATCATAATCATTATCCACACTAGGCCTAGGAGATCTGCGTCATGACTA
GTGCTTGGATTCCTCACCAATAAAAACCGCCCGGCGCCACCGGAGCGTTC
TGAACAAATCCCAGATGGAGTTTCCTGGGTCATTACTGGATCTTTCCAAC
AGGGATCCCGGCCGAGCCTCCGATATCACATTTACGTCCCCGCCTGGCCA
CTCATCGCCAGTACTGTTTGTATTTCATTAGCCATTCCTGCGACTTTGCA
AGCCTCATCCTAACCGGCTTTGTTGTACACTCTGATTCTGCCAGCGGCTA
UFO04187.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ser6-RA | 901 | CG2071-RA | 19..795 | 9..785 | 3885 | 100 | Plus |
| CG1304-RA | 893 | CG1304-RA | 34..753 | 26..745 | 2165 | 87.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:29:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20962711..20963487 | 785..9 | 3885 | 100 | Minus |
| X | 23542271 | X | 20964667..20965386 | 745..26 | 2100 | 86.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:29:19 has no hits.
UFO04187.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:49 Download gff for
UFO04187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser6-RA | 15..795 | 9..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:02 Download gff for
UFO04187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser6-RA | 19..799 | 9..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:03 Download gff for
UFO04187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser6-RA | 19..799 | 9..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:03 Download gff for
UFO04187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20962707..20963487 | 9..790 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:02 Download gff for
UFO04187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20833734..20834514 | 9..790 | 99 | | Minus |
