UFO04189.5prime Sequence
1158 bp (1025 high quality bases) assembled on 2009-02-13
> UFO04189.5prime
CAGTCGACATGTCGAAGGCAGCGGGTAAGCTGAAATCGCTAAAGAAGACG
GTGGAACGTGTGACGCACACGAGCAAACTGAAGACGAATATACCTGCGGG
AATGGCTGCTGCAGGTCCGCCATTGGGACCGATGTTGGGACAGAGAGCGA
TTAATATCGCCGCTTTCTGCAAGGACTTTAATGCCAAGACCGCGGAAATG
AAAGAGGGCGTACCGCTGCCGTGCAGAATTTCCGTAAACAGCGATCGCAG
CTACGACTTGGCCATCCACCATCCGCCGGCCACATTTTTCCTGAAGCAAG
CGGCGGGCATACAAAGGGGCACCATGACTCCTGGCAAGGAGGTTGCCGGC
ATGATCACTCTCAAGCATTTGTACGAGATTGCAGCTATTAAGATTCAGGA
CCCGCCCAATGTACTTCTTACCATGCAGCAAATGTGTGAGATGCTCATCA
GCATTGCTCGGACCTGTGGCATCAAAGTGGTCAGGGAAATAGATCCGGCG
GCCTATGGCGAGTTCCTGGAGGAGCGCAAGTTAATTGTGGAACAGCAACG
GCGCGAGTTGCAGGAGAAGCGGGAAGCAAAGATGTTGCGCACGGGCGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAAT
CATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTC
ATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGA
GCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATC
AACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACT
CATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAAGCC
ATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGT
CGCCTTGCGTATATATTTGCCCATGTGAAAACGGGGCGAAGAGTGTCATA
TGCCACGTTTAATCAACTGGTGAAACTCCCCCAGGATGCTGAAAACGAAA
AACTATTCTCATAACCCTTAAGGAAATAGCAGTTTCCGGTAACCGCCCAA
TCTTTGCAATATGTGTAACTTGCGATCGCTGGATCACTCAGAAGCGATAA
ACAACGTT
UFO04189.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL11-RA | 734 | CG3351-RA | 87..674 | 9..596 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14512115..14512403 | 140..428 | 1445 | 100 | Plus |
| 3R | 32079331 | 3R | 14512462..14512631 | 427..596 | 850 | 100 | Plus |
| 3R | 32079331 | 3R | 14511924..14512058 | 9..143 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:18 has no hits.
UFO04189.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:23 Download gff for
UFO04189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL11-RA | 49..651 | 1..605 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:09 Download gff for
UFO04189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL11-RA | 79..681 | 1..605 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:19 Download gff for
UFO04189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL11-RA | 79..681 | 1..605 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:19 Download gff for
UFO04189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14511916..14512058 | 1..143 | 97 | -> | Plus |
| 3R | 14512119..14512403 | 144..428 | 100 | -> | Plus |
| 3R | 14512464..14512638 | 429..605 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:09 Download gff for
UFO04189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10337638..10337780 | 1..143 | 97 | -> | Plus |
| arm_3R | 10337841..10338125 | 144..428 | 100 | -> | Plus |
| arm_3R | 10338186..10338360 | 429..605 | 97 | == | Plus |
