UFO04190.5prime Sequence
1138 bp (1005 high quality bases) assembled on 2009-02-13
> UFO04190.5prime
CAGTCGACATGAAATTCTTTTTGCTATTGGCTTTGGCCCTTGTGGGCATT
GCTGCTGGAGCTCAGCTTCCTGACTCCGCCACCCAGGGACCCAATCCTCA
GGATATTGCCACCCCGGAGCCGGAGTACATTGATATCGACGAACCTGCAC
CGGTGGCTGCCGCACCTGCTCCTCGTCCTGTGGCCGCTGCTCCCCGTCCC
GTCTTCGCCGCCCCTGCTCCCATCGCTCGGCCAGTTGCTCATCCAGTGGC
TCGCCCCGTGGTTGTGGCCCAATCCTTCGTCCAGCAGCCCGTCCAGCAGC
AGATTGTCCAGAGGGCTCAGTACGTGGCGCCGGTGGCTCAGCAGGTGGTG
TTGCCGCAACAGCAGCTGGTGGGACACACCTACAACAGCAGGGCTGGATA
CCAGTACCGCCGTCCAGTCTATAACGAAACCATCAAAGAAACGACCAACA
AGAAGAAGTCAAGATCAAAAGCAGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA
TGGTGAAAACGGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAAATCAA
ACTGGTGAACTCACCCAGGGATTGGCTGAGACGAAAACATATTCTCAATA
ACCCTTTAGGAAATAGCCAGGTTTCACCGTACACGCCACATCTTGCGAAT
ATATTGTTGTAGAACTGCGAAATCGTCTGCTATTCACTCCAGAAGCGGAT
GAAACCGTTTCAGTTTGCTCATGAAACGGGTGTACAAGGTGAACCTATCC
CATATACACAGCTTCACGTCTTCATGCATTCGATCTGG
UFO04190.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12607-RB | 691 | CG12607-RB | 103..567 | 9..473 | 2325 | 100 | Plus |
| CG12607-RD | 794 | CG12607-RD | 103..516 | 9..422 | 2070 | 100 | Plus |
| CG12607-RC | 1001 | CG12607-RC | 103..516 | 9..422 | 2070 | 100 | Plus |
| CG12607-RD | 794 | CG12607-RD | 616..670 | 419..473 | 260 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4447176..4447587 | 11..422 | 2060 | 100 | Plus |
| 3L | 28110227 | 3L | 4447894..4447948 | 419..473 | 260 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:03:22 has no hits.
UFO04190.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:22 Download gff for
UFO04190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12607-RB | 101..570 | 9..478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:42 Download gff for
UFO04190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12607-RB | 103..572 | 9..478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:15 Download gff for
UFO04190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12607-RB | 103..572 | 9..478 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:15 Download gff for
UFO04190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4447174..4447587 | 8..422 | 99 | -> | Plus |
| 3L | 4447898..4447948 | 423..473 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:42 Download gff for
UFO04190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4447898..4447948 | 423..473 | 100 | == | Plus |
| arm_3L | 4447174..4447587 | 8..422 | 99 | -> | Plus |
