UFO04191.5prime Sequence
1145 bp (1040 high quality bases) assembled on 2009-02-13
> UFO04191.5prime
CAGTCGACATGTTGTGCCGGCGATCATTGTTGGGCGTAACGACAAAATGC
CTAAGACTTTCGTCCACGCAGCAACACAGATCGGGTCAGCCGGAATGTGA
CCAAGCCATCGGCCTCTTGCCCGCCTACTCGGATGCAGATCGTTTGAAGA
TCTTGAAGACGATTAATGAAAGCAGCATGAATCAGATAGCCAACTACGAC
ATAACCAAGGCAAGGGCAACCAAGCTGCAAAACTGGAAGAACCGTCACGG
ACCGCTGCAGGAACTCAGCGACATCCTGTATGTGGAGGGATTCGGACTGA
AGGTGACCACCAAGTTCTTTAAGAGTCTGCTTGCGCCGCCGAGCAGTGGG
AGCGCACAAGTAGGGGAAAATAGACCAAAGACTGCACGAGTCGCGCCCTT
TATAACACCGGCCATGGACGAGGGACAGCGTTCACGTATTGTATCTGCTG
TAGGGGTGCGCATCGGAGTGACCAGTGTAAGCTGGGCGCGATTAAAGATC
GGAAGCAACGAAGCTCCCTGTCTGCTCACGCACTGGCAGCACCATGAGCT
GAACGACAAGAAGCTGCATTTGTCAGAACTTTCCCGCCGATGCCTCTATG
TATCTCACCAGATACCCGTGGCCGATTGCTACGTCATGGAGAGTCCACAA
ATGGCCCAGGCCAGCAGCAACCCAGGGAGCATCGATCAACAGAACGTGAA
CATCCAGAAGGCCCAGGTTTCCGCAATCATGAGCTTCTCCTTGATGGCCC
GATCAGATGGCGACGAGAACAAGACGAACAACGTCTACTACATGCGACGT
TTTCTCTCAGCCCGACTATTTAATCACATGGTGGGTACTGAGCGCGTGTC
GTCCGAGGATACGATATTGGGCCATGATGCGAACCCATTACAACGTGGAA
CATCAGATCCCCGAAACAGAGCCCCGTGAAGCTGCACAAACAGATCGACT
TTCCCGCTGACCTACGCTTCGAATTCTCCCAACAGAGCGCTACAGCGCGG
AGCTTCTAGGCAGGGCACTTCTCTCAGCTAGCTTTACTCGTCTCGGTGCT
CAGCAAGAATCCGCAAGCATGCATTTGTATCTCCGCACCTCTAAAAACTC
TCTCAGTCGAGCCATGCCAGCTTCTAGAAACATTGCGTGGCCCGG
UFO04191.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14450-RA | 1502 | CG14450-RA | 74..1187 | 9..1114 | 5065 | 97.9 | Plus |
| CG14450-RB | 1506 | CG14450-RB | 74..1191 | 9..1114 | 5015 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22726646..22727481 | 1023..190 | 3840 | 98.1 | Minus |
| 3L | 28110227 | 3L | 22727532..22727716 | 193..9 | 925 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:19:07 has no hits.
UFO04191.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:21 Download gff for
UFO04191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14450-RA | 64..1177 | 9..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:01 Download gff for
UFO04191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14450-RA | 74..1187 | 9..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:09 Download gff for
UFO04191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14450-RA | 74..1187 | 9..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:09 Download gff for
UFO04191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22726549..22727477 | 194..1114 | 97 | <- | Minus |
| 3L | 22727532..22727716 | 9..193 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:01 Download gff for
UFO04191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22719649..22720577 | 194..1114 | 97 | <- | Minus |
| arm_3L | 22720632..22720816 | 9..193 | 100 | | Minus |
