UFO04192.5prime Sequence
1095 bp (905 high quality bases) assembled on 2009-02-13
> UFO04192.5prime
CAGTCCACATGCAGTGCACTCGTGCAGTTGCAAGACTGGCCGGCGGCCTA
GCGAGAACCGCATGGGCAACACAACATACGTATAAGCACAGGCCAGCGAT
ACTGGGACTGCTGGAGCAGCCATGCCGCTTGTGTTCATCCACCGGCGTTG
TGGATAATACCAATAAAACGAAACCCGGCACAGCGGAAGCCGCAGAAGGC
GGTATTCTGAAGAGAGTGCTCAACAAAGTGGGCTTCACACCGAACACAAA
GGCGCGCCTCAAGGTAACCAGTCATCTGCTGTACGAAAGCGTCGCCGACA
AGATCAACTATGTGACCTTTTTCCGCGACTTCAATCTGCCCAATACCTTT
AACTCCTGGTTCTTGGTCACCGAACTGCATGTTTGGCTACTCCTGATGCG
CTCCATGGCCGAGGGCTCCGAAACGGGCGAGGATGGACGCTTCCTGCGCA
ACTGCATTGTGGAGGCGATGTGGGGAGATGTTAACACACGCGCCAAGAAA
TTGGGAGCTCACAATCCTTCACGCACCCGTCAGCAAATCGAGACCTTATC
CGAGCAGTTCCAAGCGGCCCTAATCGCCTACGACGAGGGCATCATGTCCG
ACGATCGGGTTTTGGCCTGCGCCTTGTGGCGCCGCTTCTTCGAGATGAAC
TGTGATGATTACGCGCAGATCGAGCGACTGGTGAAGTACGTCCGCCAGCA
CGCCAGCATGCTGGACAGTTTGCCACGCGATCAGTTCATTGTCAAGCCGA
AAGTGGCATGGTTGGAATTGGACAAGTGCAAGGTTGCAAGCTTTCTAGAC
CATTCGTTTGCCGCGCGGGCCCAGGAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGTCTAGGAGATCCTGGTCATGACTAGTGCT
TGATTCTCACAATAAAAACGCCCGGCGCATCCGAGCGTTCTGAACTATCA
GATGGAGTTCTGAGTCAGTACTGGATCTATCAACAGGAGTCGAGCGACCT
CGATATCAAATTACGCCCCCGTCCTGCCACTCATCGCAGAACTGCTGTAA
TCATAGCATTCGCTGACTGGAGCCAACAAACGGCAGTATGAACTG
UFO04192.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10075-RA | 924 | CG10075-RA | 88..864 | 9..785 | 3855 | 99.7 | Plus |
| CG9948-RB | 1394 | CG9948-RB | 960..1238 | 785..507 | 1365 | 99.3 | Minus |
| CG9948-RB | 1394 | CG9948-RB | 1305..1394 | 507..418 | 450 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6957006..6957284 | 785..507 | 1365 | 99.3 | Minus |
| 3L | 28110227 | 3L | 6957351..6957604 | 507..254 | 1270 | 100 | Minus |
| 3L | 28110227 | 3L | 6957663..6957852 | 254..65 | 950 | 100 | Minus |
| 3L | 28110227 | 3L | 6957964..6958021 | 66..9 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:52:43 has no hits.
UFO04192.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:20 Download gff for
UFO04192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10075-RA | 76..862 | 2..793 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:59 Download gff for
UFO04192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10075-RA | 85..871 | 2..793 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:30 Download gff for
UFO04192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10075-RA | 85..871 | 2..793 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:30 Download gff for
UFO04192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6957663..6957851 | 66..254 | 100 | <- | Minus |
| 3L | 6957965..6958024 | 2..65 | 93 | | Minus |
| 3L | 6956999..6957284 | 507..793 | 98 | <- | Minus |
| 3L | 6957352..6957603 | 255..506 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:59 Download gff for
UFO04192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6950099..6950384 | 507..793 | 98 | <- | Minus |
| arm_3L | 6950452..6950703 | 255..506 | 100 | <- | Minus |
| arm_3L | 6950763..6950951 | 66..254 | 100 | <- | Minus |
| arm_3L | 6951065..6951124 | 2..65 | 93 | | Minus |
