UFO04193.5prime Sequence
1108 bp (1010 high quality bases) assembled on 2010-09-10
> UFO04193.5prime
CAGTCGACATGGCAGCCGCACAACAAACTGAATTCCAAAAGAATTTTAGA
GTGATTGTAGAGAAGATCTTCAATCACTGGCAGGATCTCCGGCTGGCGGT
GGAGCATGGCATGGGCGGACGCAATGGCCAACAGGTGGCCATAGAAATCA
TGGACTACACCTACCAGTACTGCGTGTCCAACGAAAATATCACGCAAGGC
GAACTGGTGGAGGTCCTGGAGGAGCTGATGGACCAGGAGTTTAACACCCT
CTGCGACGACGACTCCATTCCGGAGATCTGCCGGAATCTGCTGCGCTACA
AATTGATGGCCCAGCAGAACCAGTTTCCGCAAATAGAGGCTGAATTGAGT
AAACTTCCTGCTGGCAAGGAGTGGCTGCGTCCGGATGTTAAGATCACCTA
CACACCCATCGATGGGGACTCCTCATCCGATGAGGACATGGACGACAGCG
ACGAGGAGGACGATAATGAAATGGGCCAGGGCGACGAGGAAACTCCCAGC
GGCAGTGGTCGGATGACGCGATCGCAGGCACGAAAGCAGCAGGCTGAGGA
GTTTGTGGAACCGGAAGACGGCTGGACCACCGTGCGAAGAAAAGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCA
CAAACGGCATGATGAACCTGATCGCAGCGCATCAGCACCTTGTCGCTTGC
GTATATATTTGCCATGTGAAACGGGGCGAGAGTTGTCATATTGCCACGTT
AAATCAAACTGTGAAACTCACCCAGGATGCTGAAACGAAAACATATCTCA
TTAATCCTTTAGATTAGGCAGTTTCACGTACCGCCATCTTGCATATATTT
GTAACTGC
UFO04193.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:29:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14543-RA | 657 | CG14543-RA | 28..612 | 9..593 | 2925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:29:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26056845..26057305 | 133..593 | 2305 | 100 | Plus |
| 3R | 32079331 | 3R | 26056657..26056784 | 9..136 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:29:15 has no hits.
UFO04193.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:48 Download gff for
UFO04193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 25..623 | 1..603 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:01 Download gff for
UFO04193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 22..620 | 1..603 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:01 Download gff for
UFO04193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 22..620 | 1..603 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:01 Download gff for
UFO04193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26056651..26056782 | 1..134 | 97 | -> | Plus |
| 3R | 26056847..26057310 | 135..602 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:01 Download gff for
UFO04193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21882373..21882504 | 1..134 | 97 | -> | Plus |
| arm_3R | 21882569..21883032 | 135..602 | 98 | -> | Plus |
