UFO04194.5prime Sequence
1131 bp (1013 high quality bases) assembled on 2010-09-10
> UFO04194.5prime
CAGTCGACATGTCAGGTCCACTGCCCGAAATCAGCGAAGAACAGCGCGCC
ATATTGGAGAAGTTTCGCAAGCAAATGGATGATGCGTTGGTTGGAACCCA
CGACGATTACTTCTTGGTGCGCTGGCTAAGAGCTCGAAAATGGAATCTGG
AGGCAGCGGAGAAAATGCTGAGAGCTAGTTTGAAAACACGCGCCATGTGG
AATGTGGACAACATCGAGAAGTGGGATCCACCGAAGGCATTGCAGGAGTA
TCTGCCATACGGCCTCATGGGCTACGACAACGAAGGATCACCGGTGCTGG
TCTGCCCCTTTGCCAACTTCGACATGTGGGGCATGATGCACTGCGTCACG
CGGTTTGAGTTCCAAAAGTACCTGGTCCTGCTGCTCGAGCGCTTCATGAA
GATCGCCTACGATCAGAGTCAAAAGCACGGATGGCGAGCCCGCCAGCTGG
TTGTATTTTTCGACATGCAGGATGTGAACCTGAAGCAGTACGCCTGGCGA
CCGGCTGCCGAATGTGTGATCTCTACGGTGAAGCAATACGAGGCCAACTT
CCCGGAGCTCCTCAAGATGTGCTACATCATCAACGCACCCAAGCTCTTCT
CGGTGGCGTTCAACATTGTTAAGAAATTCCTGGACGAGAACACCACCAGC
AAGATCGTGATCTACAAATCCGGAGTGGACCGCTGGCAGGAGCAACTCTT
CTCCCATGTGAACCGAAAGGCATTTCCGAACGCCTGGGGCGGCGAGATGG
TGGACAGGAACGGAGATCCCCAGTGCAAGGCACTGATGGTCTGGGGAGGC
AAGCTGCCGGAGGAGCTTTACATTGATCAGAGTAGCCAGCAGAGCGATCG
AGACTTTGTGGAGGCCCAGGTTCCCAAGGGCGACAAGTTGAAGCTGCACT
TTAAGTCAACGTTGAGGAGCAGAGATCCTCCTCCTGGGAGTTCCGCACCT
TTGACTACGACATCAAATTCGGCATCTACAGCGTGACGACAGACGGGCGA
GAAAGCGCAGCGAGGTGCCCTGGGAACCGTGTACTCCACGAGAATGGACG
AGATGTACATCTCTACACCGACCGACCACCCACTACCGTGTTCCGACAAC
CTCCGCCAGCTACCTGGCAGCAGAGCTCGGC
UFO04194.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13893-RA | 2198 | CG13893-RA | 583..1707 | 7..1122 | 5110 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 599720..600483 | 1054..294 | 3395 | 97.8 | Minus |
| 3L | 28110227 | 3L | 600547..600664 | 294..177 | 590 | 100 | Minus |
| 3L | 28110227 | 3L | 600843..600914 | 132..61 | 360 | 100 | Minus |
| 3L | 28110227 | 3L | 603371..603426 | 62..7 | 280 | 100 | Minus |
| 3L | 28110227 | 3L | 600727..600772 | 176..131 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:27:10 has no hits.
UFO04194.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:58:53 Download gff for
UFO04194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13893-RA | 571..1711 | 1..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:32:50 Download gff for
UFO04194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13893-RA | 578..1718 | 1..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:30:55 Download gff for
UFO04194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13893-RA | 578..1718 | 1..1131 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:30:55 Download gff for
UFO04194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 600727..600770 | 133..176 | 100 | <- | Minus |
| 3L | 600843..600912 | 63..132 | 100 | <- | Minus |
| 3L | 603371..603431 | 1..62 | 93 | | Minus |
| 3L | 599688..600482 | 295..1084 | 97 | <- | Minus |
| 3L | 600547..600664 | 177..294 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:32:50 Download gff for
UFO04194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 600727..600770 | 133..176 | 100 | <- | Minus |
| arm_3L | 600843..600912 | 63..132 | 100 | <- | Minus |
| arm_3L | 603371..603431 | 1..62 | 93 | | Minus |
| arm_3L | 599688..600482 | 295..1084 | 97 | <- | Minus |
| arm_3L | 600547..600664 | 177..294 | 100 | <- | Minus |
