UFO04195.5prime Sequence
1124 bp (948 high quality bases) assembled on 2010-09-10
> UFO04195.5prime
CAGTCGACATGACGACCAAAATGGCAATTAACGCAAAGGATATTTTCCGC
AATCAGCATCGCCTGATCCGCTTCCTCGAGCAGTCGATCCGGTTGTGCAG
CAACCAGTCTCTGAAAGCCGCCCAAGCGGCACAGTTGCAACAGAAATCGT
CGGCGGACTTCGAGATCACCGCCTCGCTGGACGCCCAATACACCAGTGCC
CCGGAGCCCATTAAGCATGACAAGAATCTGGGTCATCAGTTCCGTGCCTC
ACAGATTTCCGTGCGACTGGCCGCACCGGAGCAACTGCAGCCCAAGCCGG
ACAACGATGAGGAATTGGGTTTCGGCCGCCTATTCACCGATCACATGCTC
AAGATCTACTACCACAAGAGTTTGGGCGGATGGCAGCGACCGGAGATTAC
GCCGCTGGAGAATCTAGTGATGCATCCCGCCGCCAAGGTCCTGCACTACG
CCGTTGAGCTCTTTGAGGGCATGAAGGCGTACCGCGGCGTCGATGGCAAG
ATCCGCATCTTCCGGCCGGACATGAACATGAACCGCATGAACCTGGCCGC
CCAGCGATCCGGTCTGCCCACCTTCGAGGGCAAGGAGTTCGTCCAGTGCC
TGTCCCGACTGCTGTCCATTGATTCCGAGTGGGTTCCTCACACGGACACC
GCCAGCTTGTACATCCGCCCCACACTGATCGGCATTGATCCCACACTGGG
GAGTTGCTTCCTCCGACTCGGCCCTGCTCTACACGATCCTCAGCCCCCGT
GGGCAGTTACTTTAAGACAGGCTCGTCCGGTGCCGTCTCCCTGCTGGCCG
GATCCCAGTTATGTTCCGTGCCTGGCCAGGCGGCGTGGGCAATCGCAAAA
TGGGCTCCAACTACGCACCCCACAATCAATGTGCAGAAAGGAGGCGGCCC
GCCAAGGGACTGGCGCAGGTGCTGGTGGTTCTACGGCTGAGGATCATCAG
CTAATCGAAGTGGGCACCATGAACATCTTTTATTGTTCTTTCGTGAACGA
TCAAGGAAGAACAGACTGGTTAGCCCCCGCTGAGCGGCCTAATCCTGCCT
GGTATCACCCGCGAACTCCGATTCTGTGGCATGAACCGGCGTGGGGCCAT
CAAGGTCTATACACACTCACGGCT
UFO04195.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:27:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1673-RA | 2510 | CG1673-RA | 373..1449 | 9..1097 | 4785 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:27:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13398583..13399004 | 37..458 | 2110 | 100 | Plus |
| X | 23542271 | X | 13399329..13399561 | 457..689 | 1150 | 99.6 | Plus |
| X | 23542271 | X | 13399641..13399938 | 699..1007 | 955 | 94.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:27:07 has no hits.
UFO04195.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:58:52 Download gff for
UFO04195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1673-RA | 372..1441 | 1..1084 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:32:49 Download gff for
UFO04195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1673-RA | 366..1435 | 1..1084 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:30:53 Download gff for
UFO04195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1673-RA | 366..1435 | 1..1084 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:30:53 Download gff for
UFO04195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13398585..13399004 | 39..458 | 100 | -> | Plus |
| X | 13399331..13399561 | 459..689 | 99 | -> | Plus |
| X | 13399633..13399939 | 690..1009 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:32:49 Download gff for
UFO04195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13292618..13293037 | 39..458 | 100 | -> | Plus |
| arm_X | 13293364..13293594 | 459..689 | 99 | -> | Plus |
| arm_X | 13293666..13293972 | 690..1009 | 94 | -> | Plus |
