UFO04196.5prime Sequence
1100 bp (919 high quality bases) assembled on 2010-09-10
> UFO04196.5prime
CAGTCGACATGAAACAATCCAAGGACGAAGACAAGGAGGAATCGCCGGTT
CAACCGACGACCCACAATTCCAGCGCAGGCAGCAACGGCCACGACGCCAA
ATCTCCGGTGGTCACTACTGCACCAGCGGCAACTTGTTCCGTATCGGTTT
CGGATGCTTCGGGGGCCGGAGCTTCCGTTCGCACCACTGGACGGGTGAAG
AAACCCAAACAGGTGTACGATCCCTCGGACAACTATGTGTCCCGGGCCAG
CAGCAACCGCAACTCTCTCTCTTCAGTCCCGGCCACCTCCAATGTCCAGT
CACCGCCAGTCAAGGAGGCCACCGATTCGCAGGACTCCACAACCAGTCCT
GTTTCGGAGCAGCAGCAGCAGCAGCTACAGCAAGCGGCTCAACTTCGCAA
CTTCGACACGTGCCAGAAGTGTGGCAAAAGCGAACCCAAGCGCGGATCTG
GCCATAAGAGCAACTTCCTCACTTGCAAGGGCTGCATGCAGAAATGGCAC
TTCCCCTGCTTGCCGATCACGTTCCACAACCAGAGCACAGCCCGCAAGAA
GTTCAAGTGCGACAAGTGTCGCTACTGCCGGTTATGCAACGTGAGGGGGC
CAGGTCTTTCCATTTTGCAGTTTATGCGTGGATGCCTATCACCCGGACTG
CAATGATCCCACTCTCAAGCAGAGCAAAGCCGTCGAGGCCAATCCCCAAT
TGGAGATGCTTCCGATGCGAGGCGTGTAACATCGGCGGCAGCACGAGTGC
ATCCAGCGAGGAGCAAACGGGGGCCAGGAAATCCACTGCGAGCCGCGAGG
ACCAGGCCCAGCCGGTGGTGCCGAGGAAGTCGAATGCGGGTCGCAAGAGC
CGCGTCAATCGGAGCCCACGGGGCAGAAAGGCAGCGAGATTGAGAACCTA
GCCAATCGTAGACAGCCCTTGAAACAGAAAGAAGAAAGAGTACAAAAAGA
GGAGGATGAGGAGCCGGCACTAATAAAGTCAGGTGGAAAGGTCGAGCCGG
TAAATATGGAAACTGAACAGATTGGAAAATACGATCTGCCTGGCCAGAAC
AGATTCGCCTTTCTTACGCCCTAAACGTCCATCACAGCTGTATAAGAGAA
UFO04196.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:29:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2662-RB | 1765 | CG2662-RB | 87..1178 | 9..1092 | 4810 | 97 | Plus |
| CG2662-RA | 1645 | CG2662-RA | 87..1178 | 9..1092 | 4810 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:29:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2699842..2700397 | 496..1043 | 2015 | 95.3 | Plus |
| X | 23542271 | X | 2699042..2699339 | 199..496 | 1490 | 100 | Plus |
| X | 23542271 | X | 2698787..2698978 | 9..200 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:29:25 has no hits.
UFO04196.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:59:51 Download gff for
UFO04196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2662-RA | 76..1180 | 1..1098 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:06 Download gff for
UFO04196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2662-RA | 79..1185 | 1..1100 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:07 Download gff for
UFO04196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2662-RA | 79..1185 | 1..1100 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:07 Download gff for
UFO04196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2698779..2698978 | 1..200 | 98 | -> | Plus |
| X | 2699044..2699338 | 201..495 | 100 | -> | Plus |
| X | 2699842..2700453 | 496..1100 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:06 Download gff for
UFO04196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2592812..2593011 | 1..200 | 98 | -> | Plus |
| arm_X | 2593077..2593371 | 201..495 | 100 | -> | Plus |
| arm_X | 2593875..2594486 | 496..1100 | 94 | | Plus |
