UFO04202.5prime Sequence
1123 bp (1022 high quality bases) assembled on 2009-02-18
> UFO04202.5prime
CAGTCGACATGAGCGAGCAGACAAAGGAAATCGAAGCTCTGCCGCCCACC
TTGCAGGACTTCAAGGCTCCCGATCTGCCGGCCAATAAGCCAGTGCTCTT
CTTCCATCCGTACAACTTCCATGCGCAAAAAGTTCTTATGGTCTTCTACG
AGAAGAAGATCGACTTCTTTCCCTATGTGGTGGACCTGTGCAATGGCGAG
CAGTACTCCAATTGGTTCCTAAACCTCAATCCCAAGGGCGATGTGCCAGT
GCTCCAGGATGGCGCCCTCGTCATTCCCAGCTCGACGCACATCATCAACT
ATGTGGAGAGCAAATTTCGCGGTGATCGATCGCTGAAGCCAGCGCACAAC
TCCAAGGAATTCGATCAAATGCTGATCTTCGAGCAGGCAATGGCCCGCCT
TCCAGTGGGAACACTCAGCCTGGGCTCCTTCATACACGACGATCTGAAGC
TGGTGCCCAAGGCGCCCTTCATCGGACCCGTGCGCCAGTCCTGCCTGAAA
AACAATGAAAAGGTGCTGGATCTGCTGCGCCACTCGGTGGACGAACAGGC
GACCAAAAAAGCAGCGCTGCAGCACAAGCTGGACATACAGTTGCGCCGCC
ACGAGCTGGCCTCGTCCCGCGAGGAATTCCAGAAGGTTCTGGATGCCGTG
CGGCACTTTCTGCTCTATGTGGAGCAGGAGCTAACCGCCCAGGCGCCACG
CGTTGAGTGGCTGACCGGCGACGAACTGAGCGTGGCGGATATCTCGCTGG
GATTGCTGCTGCATCGACTGTATCAGCTGGGATTCGAGAATCAGTTCTGG
ACCTTCGGAAAGCTGCCGCAGTGGAGGCATACTTCTTGCGCTTCCGGCAG
CGCGAGTCCTTCCACCGCCTGCAGCCGAGCAACTTTGCCATACTGCGCGA
ATGTGACCCGACGCGGGCACTATAGCTAGAGCGGGCGCCGGCTTCCTGGT
ATGGCCATGTTCGCGCCTTCGCGCACAGCAGCTTTCTAGACCATCGTTGG
CGCGCGGCCCAGGTAGTGTCATATCATATCATATCTATCATATCCAACTA
GCCTAGGAGATCTGTATGACTATGCTGATTTCACATAAAAACGCCGGCGC
ACGAGCGTTCGACAAATCTCGAT
UFO04202.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4623-RA | 1597 | CG4623-RA | 353..1331 | 9..977 | 4645 | 99 | Plus |
| CG4623-RB | 1594 | CG4623-RB | 353..1328 | 9..977 | 4590 | 98.7 | Plus |
| CG4623-RC | 1511 | CG4623-RC | 353..1302 | 9..950 | 4550 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5143563..5143966 | 499..901 | 1970 | 99.8 | Plus |
| 3L | 28110227 | 3L | 5143073..5143265 | 132..324 | 965 | 100 | Plus |
| 3L | 28110227 | 3L | 5143323..5143497 | 324..498 | 875 | 100 | Plus |
| 3L | 28110227 | 3L | 5142305..5142430 | 9..134 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:08:35 has no hits.
UFO04202.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:16 Download gff for
UFO04202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4623-RA | 351..1331 | 9..981 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:19 Download gff for
UFO04202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4623-RA | 353..1333 | 9..981 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:11 Download gff for
UFO04202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4623-RA | 353..1333 | 9..981 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:11 Download gff for
UFO04202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5142305..5142427 | 9..131 | 100 | -> | Plus |
| 3L | 5143073..5143265 | 132..324 | 100 | -> | Plus |
| 3L | 5143324..5143497 | 325..498 | 100 | -> | Plus |
| 3L | 5143563..5144053 | 499..981 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:19 Download gff for
UFO04202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5135405..5135527 | 9..131 | 100 | -> | Plus |
| arm_3L | 5136173..5136365 | 132..324 | 100 | -> | Plus |
| arm_3L | 5136424..5136597 | 325..498 | 100 | -> | Plus |
| arm_3L | 5136663..5137153 | 499..981 | 97 | | Plus |
