UFO04206.5prime Sequence
1125 bp (1020 high quality bases) assembled on 2009-02-18
> UFO04206.5prime
CAGTCGACATGAGGGTGGCGGCGGACATGGTGTATGACTACGGCAGCGAG
GACTCCATGAGCACCACCCACCTGGACTGGCCCTTTCTCATCAAGGGCAT
CCTGGAGGGGCAGACGTGCACGCCCACTGCGCCGGAGCCGCTGGCCGCCA
TCCTGTGGGCCATCTTCGCCGTGTTTGGCATCGTGTACGCGCTACTCGGC
TACCGATGCCTGCGCGCCGTGGGCTTTCTCAGTGGACTGCTGGTGGGCGC
CAACGGGATCTTCATTCTGCAGGACTTCCAGATCACCTTCCTGGGCAAGC
CGGCGGACTCGGCGCTGGCCATTGTGGCGGGTTTGCTGGGCGCGGTGCTC
GGCTCCACATATCCGGTGGCCTCTGTCCTCATTAGCGCCTTTGCCGGCGC
CCTGCTCTCCGGCGCAGCCATGGCCGTCTGCGTGGCCACCTTTCCGGACA
ACGAGTTTGGGTACCGCGAGATCTATGTGGCCGTGGTGGGTGGAGCCGTC
ATCTGCTCCGTGCTGACCTTGTGCTGCGTGAAGTACGTGACCATTCTCAC
CTCCAGCATTGTGGGCACGGCCATGATCCTCAGCGCCATCGACTTCTTCA
CGCACGGTCTGGAGACCATCAATTGGATAATCGGCATGCGGCCGCATCCC
TCGCCGCCACCTTGCTACGGTGGCCTCCTGATCGCCGCCTGGCCCGTCAC
CATTGTGCTCAGCATCATGGTGCAGTGCTTCATTACCGCCTGGCGCGTGG
ATCACCGCAAGCGGGTGTACATGCGGCATCACAACCATCCTGGCCACGCG
CACGGCGCCCATCTGCCGCACAGCCAGCAGCAGGCGGGACCAACCACGGC
ATCGCTCCCGTCCGGCGATCCCAATCCCGCACCCGGGAGACGCGCGAGGA
GGCCAGGCAGCGCAAGTTCCGCTATCTGTACCAGGTGCGCACGGCCCGTG
GTGACATCATATCGCAAACTTCGTGTCGGCTTCTGCAGAGCCGCATCCAG
CTGAGCGGCACGGAGACGCCGTCGGAGAGATCGATAAAGAGCAGCTCAAC
GACGAAACGTTCCGGAGCGACCGCACGCCTTCACACATCCACGATCCGAC
CGGAACTGGGCGAAAGATCGAGATC
UFO04206.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14234-RA | 3638 | CG14234-RA | 420..1547 | 9..1125 | 5270 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19736994..19737361 | 94..461 | 1840 | 100 | Plus |
| X | 23542271 | X | 19737701..19738042 | 626..966 | 1660 | 99.7 | Plus |
| X | 23542271 | X | 19737423..19737588 | 461..626 | 830 | 100 | Plus |
| X | 23542271 | X | 19735989..19736076 | 9..96 | 440 | 100 | Plus |
| X | 23542271 | X | 19738198..19738312 | 967..1078 | 340 | 92.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:27:33 has no hits.
UFO04206.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:14 Download gff for
UFO04206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14234-RA | 408..1543 | 1..1125 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:53 Download gff for
UFO04206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14234-RA | 412..1547 | 1..1125 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:06 Download gff for
UFO04206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14234-RA | 412..1547 | 1..1125 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:06 Download gff for
UFO04206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19735981..19736075 | 1..95 | 95 | -> | Plus |
| X | 19736996..19737361 | 96..461 | 100 | -> | Plus |
| X | 19737424..19737588 | 462..626 | 100 | -> | Plus |
| X | 19737702..19738043 | 627..966 | 99 | -> | Plus |
| X | 19738198..19738365 | 967..1125 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:53 Download gff for
UFO04206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19631735..19632076 | 627..966 | 99 | -> | Plus |
| arm_X | 19632231..19632398 | 967..1125 | 91 | | Plus |
| arm_X | 19630014..19630108 | 1..95 | 95 | -> | Plus |
| arm_X | 19631029..19631394 | 96..461 | 100 | -> | Plus |
| arm_X | 19631457..19631621 | 462..626 | 100 | -> | Plus |
