UFO04207.5prime Sequence
958 bp (59 high quality bases) assembled on 2009-02-18
> UFO04207.5prime
CAATCCACATGAGCCGTCAGCTAAAGTTCCACCTTCGAGCTCCCGACGAC
GAGGAGTTCGCATGGGATCTGGTGGAGATTAACCTGAACCCCCCCTGCGG
CCAGCTCAAGCAAAAGTCGGCTCAGGCCTTGGACCAGCTGCTCCTGGCCA
CTCCCCCACACAGAGGCTATCCCTACGGTTATGCCGAGGACTCCGAGCCG
GATACCTACTTCTGCCGGAAAAACAACTCCACAGGCCAACTGGCCGAGAA
GGTATCACCTCCGCCGCCCGCTGCCACCAACATTAGTTGCCTCCGCCAGA
TGTACTGTCCGGAGTGCCACTAGCGATTGCACAAGCAGGGAGTCCGCCTG
GAGCGACTCCTTACCATGTGCTGCTTTGCCCTGCTGCCCATCTATCCCTG
CTGCCCGAGGCGCTCCACCAACGATTGCAAGGTCATCTGCAGCAAGTGTG
GTTACCTCTTGGGGGCATGGAAAAGACAGGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAAGTAAGTGGTCATAATCATAATCATAATCGTAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTAATGACTAGTGCTAGGAT
TCTCACCAATAAAAAACGCCCGGCGGCAACCGAACGTTCTGAGCGAATCC
TGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGA
GCTCGATATCAAATTACACCACGCCCTGCCACTCATCGCAGTACTGTTGT
AATTCATTAAGCATTCTGCCGACATGGAATCCATCACGACGGCATGATGA
ACCTGAATCGCCAGCGGCATCACCACCTTGTCGCCTTGCGTATAATATTT
TCCATGGTGAAACTGGGGCGAACAGTTGTCCTGATTGGCCACGTTTAATC
AAACTGGTGAACTCACCAGGGATTGTCTGAGACGAAATACATATTCTCAT
AGACCCAT
UFO04207.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43326-RB | 1229 | CG43326-RB | 19..491 | 7..479 | 2155 | 97 | Plus |
| CG43325-RC | 765 | CG43325-RC | 156..628 | 7..479 | 2155 | 97 | Plus |
| CG43325-RB | 628 | CG30217-RB | 19..491 | 7..479 | 2155 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22656617..22656980 | 370..7 | 1625 | 96.4 | Minus |
| 2R | 25286936 | 2R | 22656356..22656465 | 479..370 | 535 | 99.1 | Minus |
Blast to na_te.dros performed 2014-11-28 20:10:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5 | 4856 | G5 G5_DM 4856bp | 3925..3999 | 81..152 | 115 | 65.3 | Plus |
UFO04207.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:13 Download gff for
UFO04207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30217-RA | 10..487 | 1..479 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:34 Download gff for
UFO04207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43325-RA | 14..491 | 1..479 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:41 Download gff for
UFO04207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43325-RB | 14..491 | 1..479 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:41 Download gff for
UFO04207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22656356..22656464 | 371..479 | 99 | <- | Minus |
| 2R | 22656617..22656985 | 1..370 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:34 Download gff for
UFO04207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18543861..18543969 | 371..479 | 99 | <- | Minus |
| arm_2R | 18544122..18544490 | 1..370 | 95 | | Minus |
