UFO04209.5prime Sequence
1140 bp (1051 high quality bases) assembled on 2009-02-18
> UFO04209.5prime
CAGTCGACATGGATTTCTACTACTCCCCTCGAAGCAGTGGATCCCGCACC
ATTATCATGGTTGCCAAAGCTCTTGGACTGGAACTGAACAAAAAGCAACT
GCGTATCACAGAAGGGGAACACCTCAAGCCAGAATTCCTTAAGCTCAATC
CCCAGCACACCATTCCCACGCTGGTGGACAATGGATTCGCCATTTGGGAG
TCCCGTGCCATAGCCGTCTATCTGGTGGAAAAGTACGGCAAGGACGACTC
CCTTTTTCCCAATGATCCCCAGAAACGCGCATTGATCAATCAGCGATTGT
ACTTCGATATGGGAACCCTGCATGACTCCTTTATGAAGTACTATTACCCA
TTCATCCGTACTGGTCAGCTTGGGAATGCCGAGAATTATAAGAAGGTCGA
AGCTGCCTTTGAATTCCTGGACATTTTCTTGGAGGGCCAGGACTACGTGG
CTGGTAGCCAGCTAACTGTGGCCGACATCGCCATCCTCTCCAGCGTTTCC
ACTTTCGAAGTGGTTGAGTTTGACATCAGCAAGTATCCAAATGTGGCACG
TTGGTACGCCAATGCCAAAAAGATCACACCCGGATGGGATGAAAACTGGA
AGGGTCTGCTACAAATGAAAACAATGTACGAAGCCCAAAAGGCCTCATTA
AAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGG
CAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGG
ATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCC
TGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATG
CAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCA
CTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAACCGGGGGCGAAAA
GTTGTCCATATGGTCCACGTTTAATCAACTGGGTGAACTCACCCAGGAAT
TGGCTGAAAACGAAAAAACACTTTCTCAATAAACCTTTAG
UFO04209.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstD4-RA | 725 | CG11512-RA | 52..698 | 7..653 | 3235 | 100 | Plus |
| GstD2-RA | 734 | CG4181-RA | 58..623 | 39..604 | 940 | 78.2 | Plus |
| GstD5-RA | 840 | CG12242-RA | 28..628 | 5..605 | 920 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12374151..12374797 | 7..653 | 3235 | 100 | Plus |
| 3R | 32079331 | 3R | 12372028..12372593 | 39..604 | 940 | 77.7 | Plus |
| 3R | 32079331 | 3R | 12375760..12376360 | 5..605 | 890 | 76.5 | Plus |
| 3R | 32079331 | 3R | 12378672..12379083 | 126..534 | 525 | 75.7 | Plus |
| 3R | 32079331 | 3R | 12373185..12373672 | 112..599 | 490 | 73.4 | Plus |
| 3R | 32079331 | 3R | 12368257..12368457 | 320..120 | 480 | 82.6 | Minus |
| 3R | 32079331 | 3R | 12364952..12365427 | 599..124 | 355 | 71.6 | Minus |
| 3R | 32079331 | 3R | 12380071..12380347 | 44..320 | 320 | 74.4 | Plus |
| 3R | 32079331 | 3R | 12366595..12366777 | 308..126 | 300 | 77.6 | Minus |
| 3R | 32079331 | 3R | 12377316..12377483 | 153..320 | 300 | 78.6 | Plus |
| 3R | 32079331 | 3R | 12367978..12368187 | 599..390 | 225 | 73.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:27:26 has no hits.
UFO04209.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:12 Download gff for
UFO04209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD4-RA | 45..701 | 1..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:49 Download gff for
UFO04209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD4-RA | 45..701 | 1..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:01 Download gff for
UFO04209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD4-RA | 47..703 | 1..660 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:01 Download gff for
UFO04209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12374146..12374802 | 1..660 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:49 Download gff for
UFO04209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8199868..8200524 | 1..660 | 99 | == | Plus |
