UFO04210.5prime Sequence
1121 bp (1022 high quality bases) assembled on 2009-02-18
> UFO04210.5prime
CAGTCGACATGAGGGGTCTTACACTCTTGTCGCTCGCCTTCCTTGGGGTC
TGTAGTGCCCTAACTGTGCCCCATTCGCTGGTCCATCCACGCGATCTGGA
GATTCGTCATGGAGGGATTGAGGGTCGTATTACCAACGGAAACCTGGCGT
CCGAGGGTCAGGTTCCCTACATCGTGGGTGTGAGCTTGAACAGCAACGGA
AACTGGTGGTGGTGCGGCGGATCCATAATCGGACACACTTGGGTGCTCAC
TGCTGCCCACTGTACCGCTGGTGCTGATGAGGCTTCACTGTACTATGGTG
CCGTCAACTACAACGAACCTGCCTTCCGCCACACAGTGAGCAGCGAGAAC
TTCATCAGATATCCCCACTACGTTGGACTCGATCATGATTTGGCCCTGAT
CAAGACTCCCCATGTGGACTTCTACAGCCTGGTCAACAAAATAGAGCTTC
CCAGCCTGGATGACCGATACAACTCTTACGAAAACAATTGGGTTCAGGCC
GCCGGATGGGGTGCCATTTACGATGGCAGCAATGTGGTGGAGGATCTGCG
AGTGGTGGATCTGAAAGTGATCTCCGTGGCGGAGTGCCAGGCTTACTACG
GAACTGATACCGCCTCCGAGAACACCATCTGTGTGGAAACTCCGGACGGA
AAGGCCACCTGCCAGGGTGATTCTGGTGGTCCTCTGGTCACAAAGGAGGG
TGATAAGCTTATCGGAATCACTTCCTTCGTCTCCGCTTACGGATGCCAGG
TTGGAGGACCGGCTGGCTTCACTAGGGTCACCAAGTACCTGGAATGGATA
AAGGAGGAGACTGGAATCTATTATGCAAGCTTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATTCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATTCAG
ATGGAGTTTTGAGGTCATTACTTGATTTTTTCACAGGAGTCCAGCGAGCT
CGATATCAAATTACGCCCCGCCCTGCCATTCATTCGCAGAACTTGTTTGT
AAATTCATTTAAGCATTCTCT
UFO04210.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon99Ci-RA | 907 | CG31039-RA | 16..831 | 9..824 | 4080 | 100 | Plus |
| Jon25Bii-RB | 894 | CG8869-RB | 136..286 | 116..266 | 260 | 78.9 | Plus |
| Jon25Bii-RA | 884 | CG8869-RA | 136..286 | 116..266 | 260 | 78.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29925302..29925855 | 824..271 | 2770 | 100 | Minus |
| 3R | 32079331 | 3R | 29925912..29926174 | 271..9 | 1315 | 100 | Minus |
| 2L | 23513712 | 2L | 4952851..4953001 | 266..116 | 260 | 78.1 | Minus |
| 3R | 32079331 | 3R | 30489091..30489233 | 121..266 | 230 | 78.8 | Plus |
| 3R | 32079331 | 3R | 29924348..29924494 | 266..117 | 220 | 78 | Minus |
| 3R | 32079331 | 3R | 29922335..29922429 | 117..211 | 190 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:18:55 has no hits.
UFO04210.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:18 Download gff for
UFO04210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon99Ci-RA | 4..830 | 1..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:53 Download gff for
UFO04210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon99Ci-RA | 8..834 | 1..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:00 Download gff for
UFO04210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon99Ci-RA | 8..834 | 1..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:00 Download gff for
UFO04210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29925298..29925854 | 272..828 | 99 | <- | Minus |
| 3R | 29925912..29926182 | 1..271 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:53 Download gff for
UFO04210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25751020..25751576 | 272..828 | 99 | <- | Minus |
| arm_3R | 25751634..25751904 | 1..271 | 98 | | Minus |
