UFO04211.5prime Sequence
1058 bp (1007 high quality bases) assembled on 2009-02-18
> UFO04211.5prime
CAGTCGACATGCAGTACATCTATGTGATTAGTGCGCTGATTTTGGCCATC
GCCGTGCAGCAAGGATATGCCATCAAGTGCTTTGTCTGCAACAGCCACAA
AGACGCCAACTGTGCGCTGGACATACCGCCGGACAATCTGCTGAAGGACT
GCGATGAGCAGTACTCGTCCCGTGGCAAGGGAATACCCACATACTGCCGC
AAGATTACGCAGATCATCGAGTTCTCGGTGAACAGCCTGCCCCCGGATAG
CCGTGTGATTAGGACCTGTGCCTATCAGAATCAGACCTCCACCAACTATT
GCTATCAGCGTGCCGGTTTTGGTGGTCGGCAGGTGGTCTGCTCCTGCGAT
ACGGATAACTGCAACGGAGCCGGAGCGATGGGCGCATCGGCGTTGGGCGT
GGCAGCCATGGTGGGCCTCCTGCTGAGCGCCCGTCAGTATCTGCAGCGTG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCC
ACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAG
CCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTT
GTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGT
TGTCCATATTGGTCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGG
ATTGGCTGAGACGAAAAACATATTTCTCAATAAACCCTTTAGGAAATAGG
CCAGGTTTCACGTACACGCCACATCTTGCGATATATGTGTAGAACTGCCG
GAAATCGTCTGGTATTCACCTCCAGAGCGATGAAAAACGTTTCAGTTTGC
TCCATTGG
UFO04211.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7781-RB | 1981 | CG7781-RB | 397..837 | 9..449 | 2205 | 100 | Plus |
| CG7781-RA | 1834 | CG7781-RA | 250..690 | 9..449 | 2205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8322491..8322702 | 449..238 | 1060 | 100 | Minus |
| 2L | 23513712 | 2L | 8322774..8322949 | 237..62 | 880 | 100 | Minus |
| 2L | 23513712 | 2L | 8324958..8325013 | 64..9 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:19:01 has no hits.
UFO04211.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:18 Download gff for
UFO04211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7781-RA | 287..731 | 9..454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:41 Download gff for
UFO04211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7781-RA | 250..694 | 9..454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:43 Download gff for
UFO04211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7781-RA | 250..694 | 9..454 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:43 Download gff for
UFO04211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8324959..8325013 | 9..63 | 100 | | Minus |
| 2L | 8322491..8322702 | 238..449 | 100 | <- | Minus |
| 2L | 8322774..8322947 | 64..237 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:41 Download gff for
UFO04211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8322491..8322702 | 238..449 | 100 | <- | Minus |
| arm_2L | 8322774..8322947 | 64..237 | 100 | <- | Minus |
| arm_2L | 8324959..8325013 | 9..63 | 100 | | Minus |
