UFO04217.5prime Sequence
1132 bp (1048 high quality bases) assembled on 2009-02-18
> UFO04217.5prime
CAGTCGACATGTCAGCGGCACGTTTATACGGAGGATTTCGTTTATTTTCC
TCGAGTGCCGTGCAGCGCAATGCCGTCGGTGGCAAGAGCCTGGTGGAGGC
CGTGGCAGTGACCAAAAATGGTCGCACCATTGTGGCCTGGCATCCGGACA
CACCAGTTCCCTACGAGAACACCCTGCCGCTGCCAGAGATCAGCGAGATT
CAGAGCTCGGCGGTGGTTAAGGAATCGGCTCTGAAGACGGCGATGCGTGC
CTTTAAAAGCAAACATCCAGAAGTGGCTCGCCAGGAGCTGATGCAGCTGA
CCCACACGACTAAACACCGCTGGTTTCCACGCGCCCGCGACAGGAAGGCC
AAGCAAACGCCGATGGACCGGCCGTACCTAGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGAT
GAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATAT
TTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTT
TAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACA
TATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACAC
GCCACATCTTGCGAATATATGTGTAGAACTGCCGGAAATCGTCGTGTATT
CACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAACGTGTAACA
AGGTGACACTATCCATATCCCCCAGCTCACCGTCTTTCATGCAAACGAAT
TCGGATGAGCATCATCAGCGGCCAAGATGTGATAAGCGAATAAACTTGGC
TATTTTCTTACGCTTAAAGGCGATTACCGACG
UFO04217.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL42-RB | 460 | CG12921-RB | 32..403 | 9..380 | 1860 | 100 | Plus |
| mRpL42-RA | 593 | CG12921-RA | 165..536 | 9..380 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10066814..10067185 | 9..380 | 1860 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:45:09 has no hits.
UFO04217.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:08 Download gff for
UFO04217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL42-RA | 160..545 | 3..390 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:09 Download gff for
UFO04217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL42-RA | 159..544 | 3..390 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:51 Download gff for
UFO04217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL42-RA | 159..544 | 3..390 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:51 Download gff for
UFO04217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10066808..10067185 | 3..380 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:09 Download gff for
UFO04217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5954313..5954690 | 3..380 | 99 | == | Plus |
