UFO04220.5prime Sequence
1165 bp (1062 high quality bases) assembled on 2009-02-18
> UFO04220.5prime
CAGTCGACATGTCGCCGCCCGTGCTGTACTACCTGCCGCCCAGTCCGCCC
TGCCGCAGCATTCTGCTGCTGGCCAAGATGCTGGACATCGACTTCGAGCT
GAAGATCGTCAACATTTTGGAGGGGGAGCAGCTGAAACCGGACTTTGTGG
CCATGAATCCGCAGCACTGTGTGCCGACTATGAACGACGAGGGTCTGGTT
TTGTGGGAAAGTCGTGCCATACTCTCCTATCTGGTGGCTGCCTACGGCAA
GAGTGACCAACTGTATCCCACGGACATAAGGGTGAGGGCTTTGGTGGACC
AACGCCTCCAGTTCGATTTGGGCACCCTATACATGCGACTCACGGACTAC
TATTTCCCCACAATGTTTATTGGTGCGCCCCTGGACGAAGGAAAGCGTGC
CAAATTGGCGGAGGCTGTGGGCTGGCTAAACACAATCTTGGAGGGCAGAC
AGTTTTCCGCCGCCGATCACTTCACCATCGCGGATCTCACGCTTTTGGTG
ACCGTTTCCCAGCTGGAGGCCTTCGAATTTGAACTTCGACCCTATAAACA
TATCCGCCAATGGCTCGATCGCTGCAAGGATCACATGGCACCGTTTGACT
ACGAGGAACTCAATGCCAACAAGGCCAATATGTTGGCCGATATGTTCAAG
GCCAAGATGAATCAATCGGCGGGCGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCG
ATATCAAATTACGCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAGCATTCTGCCGACATGCAGCCATCACAAACGGCATGATGAACCTGAA
TCGCCAGCGCATCAGCACCTTGTCGCCTTGGCGTATATATTTGCCATGGG
TGAAACCGGGGGCGAAGAGTTGTCCATTTGCCACGTTTAATTCAAACTGG
GTGAACTCACCAAGATTGCTGAACGAACATATTTTTCCATAAACCTTTAG
GTATGGGCAGGGTTT
UFO04220.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstD11-RB | 839 | CG17639-RB | 81..746 | 9..674 | 3330 | 100 | Plus |
| GstD11-RA | 1051 | CG17639-RA | 293..958 | 9..674 | 3330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12385211..12385531 | 354..674 | 1605 | 100 | Plus |
| 3R | 32079331 | 3R | 12384410..12384612 | 9..211 | 1015 | 100 | Plus |
| 3R | 32079331 | 3R | 12384678..12384821 | 210..353 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:19:34 has no hits.
UFO04220.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:33 Download gff for
UFO04220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17639-RB | 64..732 | 9..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:21 Download gff for
UFO04220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD11-RA | 293..961 | 9..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:23 Download gff for
UFO04220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD11-RA | 293..961 | 9..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:23 Download gff for
UFO04220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12384680..12384821 | 212..353 | 100 | -> | Plus |
| 3R | 12384410..12384612 | 9..211 | 100 | -> | Plus |
| 3R | 12385211..12385534 | 354..678 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:21 Download gff for
UFO04220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8210132..8210334 | 9..211 | 100 | -> | Plus |
| arm_3R | 8210402..8210543 | 212..353 | 100 | -> | Plus |
| arm_3R | 8210933..8211256 | 354..678 | 99 | == | Plus |
