UFO04221.5prime Sequence
1143 bp (1035 high quality bases) assembled on 2009-02-18
> UFO04221.5prime
CAGTCGACATGCTAAACAAGAAGCTGAACGAGAACGACGTTCGCAAGCTA
TTTGAAGTCCACGGAGCCATCGAGGAGTGCACCGTCCTTCGGGACCAAAA
CGGACAGAGCAAGGGTTGTGCCTTCGTCACATTCGCCACCAAGCACGCTG
CCATTTCGGCCATTAAAGTGACCCTGAGCCAGAACAAGATCATGGAGGGC
TGCACATCGCCGCTGGTCGTCAAGTTCGCCGATACGCAAAAAGAGAAGGA
GCAGAAGAAGATTCAGCAAATTCAGGCCAATCTCTGGAACCTGGCCAGCA
ACATCAACATACCTCTGGGCCAAACGGCCACCAGCGTGACCACGCCCATC
CTGCCCAATCCGCCGCAGCAGCCTTCGCCGGTTCTCGGCGCAGATGCCAT
TACCCCGGCCTCCATTCAACTGCTGCAGCAGCTGCAGGCGGTGGGACTGC
AGCACCAGTTGTTGCAAGCCCTCACAGGACTGGGAGCCCAGCAGAGCAGC
TCGGCGACGGACACCAGCGCTGTGGCGGCCGCAGGACTTTTGACCCCGAT
GACCGTCCAGAATCTAGCGGCCATTGCGGCCATGACGCAGCCGAGTCTCT
CGAATGCCGCCGCGGCAGCCGCCGCTGCCACATCGCCTGGAAGCGCCCAA
CTGACCAACACGGCTGCGCTGCTCTGGTCCGATCCGAATCCAATGGCATC
GGCATATATGTCAACAGCCGCCGGTCTGCCGCAATTCGGGAGCGCCAGTG
CATTGTCCACTTCGCCGCTGGCCAGCGTTGCCCTCAGCGCCGCAGCCGCC
GCCGCAGCGGGAAAGCAGATTGAAAGGACCCGAGGGCTGCAACCTTTTCA
TCTACCATCTGCCGCAGAGTTCACCGATACGGATCTGGGCCTCCACGTTC
CTGCCCTTCGGCAATGTGATCTCGGCCAAGGTGTCATCGACAACAGACGA
GCCTGTCGAAGTGCTTCGGGTTGTCTCCTTCGACATCCGGACTCGGCCCA
GTGGCCATAATGGCGATGAACGGCTCAGGTGGGCACAAGCGTCCTCAGGT
GCGCTGAGAGCCCAGAACTCGAGCCCTACGCAGCTTTCTAAACATTCGTT
GGGCGCGCGGCCAGGGTAAGGTGGTCTATCCTAATTCATATCT
UFO04221.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aret-RK | 3510 | CG31762-RK | 1064..2146 | 9..1079 | 4960 | 98.2 | Plus |
| aret-RJ | 2431 | CG31762-RJ | 1093..2175 | 9..1079 | 4960 | 98.2 | Plus |
| aret-RI | 3019 | CG31762-RI | 788..1870 | 9..1079 | 4960 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12298813..12299111 | 170..468 | 1495 | 100 | Plus |
| 2L | 23513712 | 2L | 12299186..12299395 | 467..676 | 1050 | 100 | Plus |
| 2L | 23513712 | 2L | 12298588..12298749 | 9..170 | 810 | 100 | Plus |
| 2L | 23513712 | 2L | 12304446..12304594 | 676..824 | 745 | 100 | Plus |
| 2L | 23513712 | 2L | 12310680..12310885 | 825..1025 | 670 | 96.1 | Plus |
| 2L | 23513712 | 2L | 12385632..12385718 | 59..145 | 240 | 85.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:43 has no hits.
UFO04221.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:32 Download gff for
UFO04221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RA | 1053..2117 | 3..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:24 Download gff for
UFO04221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RI | 782..1846 | 3..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:33 Download gff for
UFO04221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RI | 782..1846 | 3..1060 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:33 Download gff for
UFO04221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12299188..12299394 | 469..675 | 100 | -> | Plus |
| 2L | 12304446..12304595 | 676..826 | 99 | -> | Plus |
| 2L | 12310682..12310923 | 827..1060 | 93 | | Plus |
| 2L | 12298582..12298749 | 3..170 | 98 | -> | Plus |
| 2L | 12298814..12299111 | 171..468 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:24 Download gff for
UFO04221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12298582..12298749 | 3..170 | 98 | -> | Plus |
| arm_2L | 12298814..12299111 | 171..468 | 100 | -> | Plus |
| arm_2L | 12299188..12299394 | 469..675 | 100 | -> | Plus |
| arm_2L | 12304446..12304595 | 676..826 | 99 | -> | Plus |
| arm_2L | 12310682..12310923 | 827..1060 | 93 | | Plus |
