UFO04222.5prime Sequence
1124 bp (1001 high quality bases) assembled on 2009-02-18
> UFO04222.5prime
CAGTCGACATGTCGCATCTCCGGGGTTTGGGGCGACTGCTGATCGCCGTG
ACCTTCTTCACATGCGGATTCTTCGTCAACATTGGCCAGCTCCTGCTGAT
TCTCCTCGTGAGGCCCTTCGATAAGAAGCTATCCCGCAGTCTGGCCTACT
ACCTGCACTACTCCTTCTATTGCATCCTTGTCTGTGTGGCGGAATGGTAT
GCGGGCAGCAAGCTGAGGGTGTACATCGATCCCCAGGACGAGCAGAAGTT
CTTCGGCAAGGAGCATGGACTGCTCCTGATGAACCACACGTACGAGATCG
ACTGGCTGACCGCCTGGATGATCACCGACAAGCTGGGCAATCTGGGAGGC
ACCAAGGCGTATGCCAAGAAGATGCTGCGCTATGTTCCGGTCCTGGGATG
GGTCTGGTGGATGGCCGAGTTCATCTTCCTTGACCGCAACTTCGAGAAGG
ACAAGGTGGTGATCAAGACGCAGCTGAAGGAGGTCTTCTCCTATCCGGAT
CCCGTGTGGCTACTGCTGAACGCGGAGGGCACCCGTTTCACACCCGCCAA
ACACGAGCTGTCAGTCAAGTTCGCCGAGGAGCGAGGTCTTCCCCTCCTCA
AGCACCATCTGATTCCGCGCACTAAGGGATTCACGACCAGTCTGCCCACC
ATGCGTGGCATCTGTCCTGCCATCTACGACATCAATCTGGCCTTCAAGAA
GAATGCCGAGCCAAAGCCCACCATGCTGTCCCAGTTGAACGGAGAGCCCG
TGGAACCGTACATGTACATTCGCCGAGTGCCACTGGACGTGGTTCCCGAT
GACGAGAAAGAGGCCGCCGCCTGTATGCAGACTTCTTTGCGGAAAAGGAC
AAGATCATCGACAGCTTCCACGAGACCGGCAGCTTCTTTAAGAATTCCGG
AGTCAAGGAGTGCCCGAGAAAATCTACAGCCGCGCCTGAGCACGCCTCCT
CACTTCTTGGGCTGGGCCACCTTTGCCGTCCTGTGCATTCTGCACTACTT
GGTCACCCTCCCCTGGTTGCCGGCAACTGATTGCTCAATCAAGTTCTTTC
CATTTTGGGAGGATTCTATAGCCTCATGAATACGCTGTGGAATGCTTCGA
AAATCACGAAAGCCCTCTGGCGTA
UFO04222.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4753-RC | 1575 | CG4753-RC | 280..1389 | 9..1114 | 5130 | 98 | Plus |
| CG4753-RA | 1355 | CG4753-RA | 60..1169 | 9..1114 | 5130 | 98 | Plus |
| CG4753-RB | 1570 | CG4753-RB | 275..1384 | 9..1114 | 5130 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16379700..16380235 | 710..175 | 2680 | 100 | Minus |
| 3L | 28110227 | 3L | 16379270..16379629 | 1064..709 | 1285 | 94.2 | Minus |
| 3L | 28110227 | 3L | 16380471..16380636 | 174..9 | 830 | 100 | Minus |
| 3L | 28110227 | 3L | 16383353..16383787 | 688..254 | 540 | 74.9 | Minus |
| 3L | 28110227 | 3L | 16382539..16382670 | 910..780 | 250 | 81.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:03:39 has no hits.
UFO04222.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:12 Download gff for
UFO04222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4753-RA | 55..1171 | 9..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:52 Download gff for
UFO04222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4753-RB | 271..1391 | 1..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:23 Download gff for
UFO04222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4753-RB | 271..1391 | 1..1123 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:23 Download gff for
UFO04222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16379270..16379627 | 711..1064 | 95 | <- | Minus |
| 3L | 16379700..16380235 | 175..710 | 100 | <- | Minus |
| 3L | 16380471..16380636 | 9..174 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:52 Download gff for
UFO04222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16372370..16372727 | 711..1064 | 95 | <- | Minus |
| arm_3L | 16372800..16373335 | 175..710 | 100 | <- | Minus |
| arm_3L | 16373571..16373736 | 9..174 | 100 | | Minus |
