UFO04223.5prime Sequence
1060 bp (993 high quality bases) assembled on 2009-02-18
> UFO04223.5prime
CAGTCGACATGGCAATCACAACCTACGTCTATGCCATGTGCCTTGTTTTG
GCCGCCAATTTGTTAACAGTGAATGCCATTCGGTGCCATCAGTGTAATTC
GCATGACAACGAGGATTGCGGTGGCCTGGTGGTGAACACTCCTCGTGCCC
AGAGGGACAACCAGTACCTGACGGACTGCGTCCCGCCCAGCGGTGAGGTG
GCCTTCTGCCGCAAGACGGTGATCAATTTCGAGCAGAACGACGAGCGCAG
AATCGAGAGAAGCTGTGGTTTCATTCCGGAGAAGATCCAAAACGCTTGCT
TCACCGCCGACAACGAGGGCTACAAGCAGATCATTTGCACCTGTCCCGAC
GAGGGATGCAATGGAGCCAGCTCCCTGCTGGGTGTCCGCCAGTTGGGCTA
CAGTCTGGTTGGATCTGTCGTCAGTCTGGCACTGGCCAGCATGCTCAGGC
ATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGG
AAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC
CTTGTCGCCTTGCGTATATATTTGCCCATGATGAAAACGGGGCGAAGAAG
TTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCAGGGA
TTGCTGAGACGAAACATATCTCATAACCCTTTAGGAATAGCCAGTTTCAC
GTACACGCACATCTGCGAATATATGTGTAGAACTGCCGAATCGTCTGTAT
CACTCAGACGATGAAAACGTTCAGTTTGCTCATGGAAACGGTGTAACAGG
TGAAACTATC
UFO04223.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14275-RB | 848 | CG14275-RB | 184..627 | 9..452 | 2220 | 100 | Plus |
| CG14275-RA | 849 | CG14275-RA | 185..628 | 9..452 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8332305..8332690 | 67..452 | 1930 | 100 | Plus |
| 2L | 23513712 | 2L | 8329704..8329764 | 9..69 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:06:19 has no hits.
UFO04223.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:11 Download gff for
UFO04223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14275-RA | 177..626 | 1..452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:40 Download gff for
UFO04223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14275-RA | 179..628 | 1..452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:41 Download gff for
UFO04223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14275-RA | 179..628 | 1..452 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:41 Download gff for
UFO04223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8329698..8329764 | 1..69 | 94 | -> | Plus |
| 2L | 8332308..8332690 | 70..452 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:40 Download gff for
UFO04223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8329698..8329764 | 1..69 | 94 | -> | Plus |
| arm_2L | 8332308..8332690 | 70..452 | 100 | == | Plus |
