UFO04225.5prime Sequence
1140 bp (1032 high quality bases) assembled on 2009-02-18
> UFO04225.5prime
CAGTCGACATGCCGAAAACAGTGGTAGTTACTCACCCAGGAAAACCGATA
AATAACGAGAAAAGATTTCGCTTCGAGCTTCTCTATTTCTGTGTGATTCT
TCTAATGGTTGTGGGTTTAGCAGCTGGCTATTTCATGTGGATGATGTCCT
TCTCCACACATTCGCCGAACAAGGGCCTACACATACTCGATCGCAGCGAA
TGGCTGGGGGAACCACCCAGTGGGAAGTACCCGCACCTTAAGCTTCCCGT
CTCCAATATTATCATTCATCACACGGCAACCGAAGGATGCGAACAAGAGG
ATGTTTGCATATACCGCATGAAGACCATTCAGGCGTTCCATATGAAATCT
TTTGGTTGGGTCGACATTGGCTATAACTTTTTGGTGGGCGGCGATGGTCA
AATATACGTAGGACGCGGCTGGCACATCCAGGGTCAGCATGTGAATGGAT
ATGGTGCCATCTCCGTTAGCATAGCCTTTATCGGAACTTTTGTGAATATG
GAGCCACCAGCTCGACAAATCGAAGCAGCCAAGCGACTGATGGACGAGGG
CGTACGTCTCCATAGATTGCAACCGGATTATCATATATATGCCCATCGAC
AATTAAGCCCCACCGAAAGTCCTGGCCAGAAGCTTTTCGAGCTGATGCAA
AATTGGCCCCGATTCACGCAGGATCCAACATCATTGCGACTCCTAAGCAA
TGAGACTGTAAAGATCGTTACCCGACCCTATTGGTTGGCCCAGCCACCTA
TAGTGCCACTTACTCCTTTGAAGCTGCCAATTGAGAGCGTGAGATTTGTG
GCAACCAACACGCCATCATGTTTCACTCAAGCCGAGTGCACTTTTCGAGT
GCGCCTTCTGCAAAATTGGCACATCGAGAGCAATGGATATAACGATTTAA
CTATAATTTCGTTGCGGCTGGGGACGAAAACATCTACGAGGCCAGAGGTT
GGGATCACAGCTGTGAACCTCCAAGATGCAGATGACTAGTCGTGCCTTTA
TGGTCATCGAGTAGCAATAAAAAGATAGCATTAGACTATCAACAGGCATA
AACTTGTCTATTAGCAGACTTTAGTCTATTGACGATTTAGAAAGTCAGCA
GCCTTCTAGAACATCGGTTGGCGCCGGGCCAGGTAATGCT
UFO04225.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-LF-RA | 1355 | CG4437-RA | 78..1179 | 9..1093 | 5050 | 98.2 | Plus |
| UGP-RE | 2686 | CG4347-RE | 2240..2669 | 1093..681 | 1675 | 95.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9350442..9350828 | 298..684 | 1935 | 100 | Plus |
| 3L | 28110227 | 3L | 9350884..9351245 | 681..1035 | 1470 | 97 | Plus |
| 3L | 28110227 | 3L | 9349896..9350048 | 148..300 | 765 | 100 | Plus |
| 3L | 28110227 | 3L | 9349686..9349824 | 9..147 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:37 has no hits.
UFO04225.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:27 Download gff for
UFO04225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LF-RA | 67..1185 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:21 Download gff for
UFO04225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LF-RA | 69..1187 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:30 Download gff for
UFO04225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LF-RA | 69..1187 | 1..1101 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:30 Download gff for
UFO04225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9349677..9349824 | 1..147 | 97 | -> | Plus |
| 3L | 9349896..9350047 | 148..299 | 100 | -> | Plus |
| 3L | 9350444..9350828 | 300..684 | 100 | -> | Plus |
| 3L | 9350888..9351337 | 685..1117 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:21 Download gff for
UFO04225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9342777..9342924 | 1..147 | 97 | -> | Plus |
| arm_3L | 9342996..9343147 | 148..299 | 100 | -> | Plus |
| arm_3L | 9343544..9343928 | 300..684 | 100 | -> | Plus |
| arm_3L | 9343988..9344437 | 685..1117 | 92 | -> | Plus |
